Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21189 | 5' | -61.9 | NC_004778.3 | + | 128473 | 0.71 | 0.363567 |
Target: 5'- gCUGCGCCGaUCGAcgccGACGACGGUCa--- -3' miRNA: 3'- -GACGCGGC-GGCU----CUGCUGCCGGcaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 121540 | 0.68 | 0.526242 |
Target: 5'- -aGCGCCGCCG-GccagcaacacgcccACGcCGGCCGUu- -3' miRNA: 3'- gaCGCGGCGGCuC--------------UGCuGCCGGCAca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 121408 | 0.71 | 0.355892 |
Target: 5'- -cGUGCgGCUGAGcagcaggcacGCGuCGGCCGUGUc -3' miRNA: 3'- gaCGCGgCGGCUC----------UGCuGCCGGCACA- -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 119991 | 1.06 | 0.001252 |
Target: 5'- gCUGCGCCGCCGAGACGACGGCCGUGUc -3' miRNA: 3'- -GACGCGGCGGCUCUGCUGCCGGCACA- -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 115298 | 0.68 | 0.482312 |
Target: 5'- aUGCGCCGaaaaaauUGAGGCGGcCGGCCGc-- -3' miRNA: 3'- gACGCGGCg------GCUCUGCU-GCCGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 114362 | 0.68 | 0.491517 |
Target: 5'- cCUGCG-CGCCGcGGGCGA-GGCCGg-- -3' miRNA: 3'- -GACGCgGCGGC-UCUGCUgCCGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 111387 | 0.67 | 0.591189 |
Target: 5'- gCUGCGaggugcucaCCagcauacguuugaggGCCGGGAUGAgGGCUGUGUu -3' miRNA: 3'- -GACGC---------GG---------------CGGCUCUGCUgCCGGCACA- -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 109123 | 0.66 | 0.636601 |
Target: 5'- uUGUGCCGCCGAuggugccguuaGAcCGuACGGCCa--- -3' miRNA: 3'- gACGCGGCGGCU-----------CU-GC-UGCCGGcaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 103374 | 0.72 | 0.305407 |
Target: 5'- -aGCGCCGUgGccACGACGGCgGUGg -3' miRNA: 3'- gaCGCGGCGgCucUGCUGCCGgCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 100357 | 0.7 | 0.371355 |
Target: 5'- -cGCuCCGCCGAGGCGGCGcCCGa-- -3' miRNA: 3'- gaCGcGGCGGCUCUGCUGCcGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 100241 | 0.67 | 0.545394 |
Target: 5'- aCUGCcgcgugcgcgauugGCUGCCGAG-CGACGacCCGUGg -3' miRNA: 3'- -GACG--------------CGGCGGCUCuGCUGCc-GGCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 97001 | 0.66 | 0.626711 |
Target: 5'- gCUGCGCCGCaugcuGAUG-CaGCCGUGc -3' miRNA: 3'- -GACGCGGCGgcu--CUGCuGcCGGCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 88161 | 0.68 | 0.510163 |
Target: 5'- -cGCGCuCGCCaAGAUGACGGacguCGUGc -3' miRNA: 3'- gaCGCG-GCGGcUCUGCUGCCg---GCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 81784 | 0.67 | 0.557964 |
Target: 5'- gUGCGCggccUGCCGGGGCGGCGuCUGUa- -3' miRNA: 3'- gACGCG----GCGGCUCUGCUGCcGGCAca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 75146 | 0.68 | 0.482312 |
Target: 5'- uUG-GCCGCCGGGGCGGgcucacUGGCCGc-- -3' miRNA: 3'- gACgCGGCGGCUCUGCU------GCCGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 69773 | 0.68 | 0.473192 |
Target: 5'- -gGUGUgGCgCGAGAaccgagaGGCGGCCGUGc -3' miRNA: 3'- gaCGCGgCG-GCUCUg------CUGCCGGCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 65156 | 0.72 | 0.29866 |
Target: 5'- ---aGCgGCCGGGugGACGGCCGc-- -3' miRNA: 3'- gacgCGgCGGCUCugCUGCCGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 61295 | 0.68 | 0.500802 |
Target: 5'- aUGCGCCGUCGccGACGugcgagaguACGGCCGc-- -3' miRNA: 3'- gACGCGGCGGCu-CUGC---------UGCCGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 61000 | 0.69 | 0.464159 |
Target: 5'- -gGCGgCGgCGGcGGCGGCGGCgGUGg -3' miRNA: 3'- gaCGCgGCgGCU-CUGCUGCCGgCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 49434 | 0.68 | 0.491517 |
Target: 5'- uUGCGCCGCCGAcGcagccucuuGCGAgGGCaCGUu- -3' miRNA: 3'- gACGCGGCGGCU-C---------UGCUgCCG-GCAca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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