Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21189 | 5' | -61.9 | NC_004778.3 | + | 100241 | 0.67 | 0.545394 |
Target: 5'- aCUGCcgcgugcgcgauugGCUGCCGAG-CGACGacCCGUGg -3' miRNA: 3'- -GACG--------------CGGCGGCUCuGCUGCc-GGCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 103374 | 0.72 | 0.305407 |
Target: 5'- -aGCGCCGUgGccACGACGGCgGUGg -3' miRNA: 3'- gaCGCGGCGgCucUGCUGCCGgCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 65156 | 0.72 | 0.29866 |
Target: 5'- ---aGCgGCCGGGugGACGGCCGc-- -3' miRNA: 3'- gacgCGgCGGCUCugCUGCCGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 119991 | 1.06 | 0.001252 |
Target: 5'- gCUGCGCCGCCGAGACGACGGCCGUGUc -3' miRNA: 3'- -GACGCGGCGGCUCUGCUGCCGGCACA- -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 8466 | 0.66 | 0.646487 |
Target: 5'- -gGCGgCGCCGGGGCaGCGGgCGcGg -3' miRNA: 3'- gaCGCgGCGGCUCUGcUGCCgGCaCa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 109123 | 0.66 | 0.636601 |
Target: 5'- uUGUGCCGCCGAuggugccguuaGAcCGuACGGCCa--- -3' miRNA: 3'- gACGCGGCGGCU-----------CU-GC-UGCCGGcaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 97001 | 0.66 | 0.626711 |
Target: 5'- gCUGCGCCGCaugcuGAUG-CaGCCGUGc -3' miRNA: 3'- -GACGCGGCGgcu--CUGCuGcCGGCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 17245 | 0.67 | 0.567689 |
Target: 5'- aUGCGCgagggCGCCGAGaACGAagugcaguCGGCCGa-- -3' miRNA: 3'- gACGCG-----GCGGCUC-UGCU--------GCCGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 10706 | 0.67 | 0.557964 |
Target: 5'- gUGCGCCGCCGcGcCGA-GGCCa--- -3' miRNA: 3'- gACGCGGCGGCuCuGCUgCCGGcaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 61000 | 0.69 | 0.464159 |
Target: 5'- -gGCGgCGgCGGcGGCGGCGGCgGUGg -3' miRNA: 3'- gaCGCgGCgGCU-CUGCUGCCGgCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 8001 | 0.68 | 0.473192 |
Target: 5'- gUGCGCggCGCCGAcGGCGgcgacACGGCCGa-- -3' miRNA: 3'- gACGCG--GCGGCU-CUGC-----UGCCGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 5547 | 0.68 | 0.519597 |
Target: 5'- gCUGUGCCucuuCCGcaAGugGAuaUGGCCGUGUu -3' miRNA: 3'- -GACGCGGc---GGC--UCugCU--GCCGGCACA- -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 100357 | 0.7 | 0.371355 |
Target: 5'- -cGCuCCGCCGAGGCGGCGcCCGa-- -3' miRNA: 3'- gaCGcGGCGGCUCUGCUGCcGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 88161 | 0.68 | 0.510163 |
Target: 5'- -cGCGCuCGCCaAGAUGACGGacguCGUGc -3' miRNA: 3'- gaCGCG-GCGGcUCUGCUGCCg---GCACa -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 25084 | 0.68 | 0.473192 |
Target: 5'- -cGCGCCGaCCGAGucacguACGcCGGCCaacGUGUu -3' miRNA: 3'- gaCGCGGC-GGCUC------UGCuGCCGG---CACA- -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 128473 | 0.71 | 0.363567 |
Target: 5'- gCUGCGCCGaUCGAcgccGACGACGGUCa--- -3' miRNA: 3'- -GACGCGGC-GGCU----CUGCUGCCGGcaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 1261 | 0.77 | 0.15014 |
Target: 5'- uCUGCGCuUGUgGGGACGACGGCggCGUGUa -3' miRNA: 3'- -GACGCG-GCGgCUCUGCUGCCG--GCACA- -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 61295 | 0.68 | 0.500802 |
Target: 5'- aUGCGCCGUCGccGACGugcgagaguACGGCCGc-- -3' miRNA: 3'- gACGCGGCGGCu-CUGC---------UGCCGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 10639 | 0.68 | 0.498008 |
Target: 5'- -gGCGCCGCUGGGccucguaauugugcGCGcCGGCCGc-- -3' miRNA: 3'- gaCGCGGCGGCUC--------------UGCuGCCGGCaca -5' |
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21189 | 5' | -61.9 | NC_004778.3 | + | 32055 | 0.67 | 0.548287 |
Target: 5'- -cGCGCCGCCacacGAUGGCGGUCa--- -3' miRNA: 3'- gaCGCGGCGGcu--CUGCUGCCGGcaca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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