miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 48935 0.69 0.66609
Target:  5'- -aGCCUgaGCGAgcUGCGCgacuugggcugcgUGCUGGUCCu -3'
miRNA:   3'- cgCGGAaaCGUU--ACGCG-------------GCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 13386 0.69 0.667113
Target:  5'- -aGCCUaggggccGCAcacAUGCGCaCGCCGGaCCa -3'
miRNA:   3'- cgCGGAaa-----CGU---UACGCG-GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 92894 0.69 0.667113
Target:  5'- cGCGCCg--GUuccaAAUGCGgCGCgucaUGGUCCa -3'
miRNA:   3'- -CGCGGaaaCG----UUACGCgGCG----GCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 14509 0.69 0.674258
Target:  5'- -gGCC---GCGGUGCGCaCGCCGGcuugcgcuuuagcgUCCa -3'
miRNA:   3'- cgCGGaaaCGUUACGCG-GCGGCC--------------AGG- -5'
21190 3' -56.8 NC_004778.3 + 19492 0.69 0.697599
Target:  5'- cGCGCCgacgUGCAAaugguUGCGCaccuCGUCGGgcacuUCCa -3'
miRNA:   3'- -CGCGGaa--ACGUU-----ACGCG----GCGGCC-----AGG- -5'
21190 3' -56.8 NC_004778.3 + 10639 0.69 0.717662
Target:  5'- gGCGCCgcuggGCcucguaauUGUGCgCGCCGG-CCg -3'
miRNA:   3'- -CGCGGaaa--CGuu------ACGCG-GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 30414 0.68 0.73743
Target:  5'- aGCGCC---GCGAcGCGuuGCCGGg-- -3'
miRNA:   3'- -CGCGGaaaCGUUaCGCggCGGCCagg -5'
21190 3' -56.8 NC_004778.3 + 76613 0.68 0.73743
Target:  5'- aGCGCCg--GCAugGCGUCGg-GGUCCa -3'
miRNA:   3'- -CGCGGaaaCGUuaCGCGGCggCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 91807 0.68 0.747181
Target:  5'- gGUGCCg--GuCAcgGCGCCGCCGa--- -3'
miRNA:   3'- -CGCGGaaaC-GUuaCGCGGCGGCcagg -5'
21190 3' -56.8 NC_004778.3 + 14126 0.71 0.574995
Target:  5'- ----aUUUGCAAUGUGCgGCCGG-CCg -3'
miRNA:   3'- cgcggAAACGUUACGCGgCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 80112 0.71 0.554789
Target:  5'- gGUGCCgcacacGUuGUGCGgCGCCGcGUCCa -3'
miRNA:   3'- -CGCGGaaa---CGuUACGCgGCGGC-CAGG- -5'
21190 3' -56.8 NC_004778.3 + 86333 0.71 0.554789
Target:  5'- aGCGCUUgcGCA--GCaGCCGCCGGUa- -3'
miRNA:   3'- -CGCGGAaaCGUuaCG-CGGCGGCCAgg -5'
21190 3' -56.8 NC_004778.3 + 7859 0.71 0.554789
Target:  5'- cGCGCCUUaacaccuaucUGCAggGCGCCaaaacgGCCGG-Cg -3'
miRNA:   3'- -CGCGGAA----------ACGUuaCGCGG------CGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 119979 0.72 0.523909
Target:  5'- uUGCCagUGUGAgcUGCGCCGCCGagacgacggccguGUCCa -3'
miRNA:   3'- cGCGGaaACGUU--ACGCGGCGGC-------------CAGG- -5'
21190 3' -56.8 NC_004778.3 + 59501 0.72 0.523909
Target:  5'- cGCGCUUUUaaGCGcggcaauuuuGUGUGCCGCgguagauucauacCGGUCCg -3'
miRNA:   3'- -CGCGGAAA--CGU----------UACGCGGCG-------------GCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 127755 0.72 0.505309
Target:  5'- uGCGCC--UGCuc-GCGCUGCUGG-CCg -3'
miRNA:   3'- -CGCGGaaACGuuaCGCGGCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 97162 0.72 0.495633
Target:  5'- -aGCCcga-CAcgGCGCCGCCGG-CCa -3'
miRNA:   3'- cgCGGaaacGUuaCGCGGCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 10678 0.73 0.476542
Target:  5'- cGCGCCcgaagcgugGCAcguguugaguGUGCGCCGCCGcG-CCg -3'
miRNA:   3'- -CGCGGaaa------CGU----------UACGCGGCGGC-CaGG- -5'
21190 3' -56.8 NC_004778.3 + 119163 1.13 0.001147
Target:  5'- aGCGCCUUUGCAAUGCGCCGCCGGUCCc -3'
miRNA:   3'- -CGCGGAAACGUUACGCGGCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 114073 0.66 0.837601
Target:  5'- aGCGUCggcgaaaGCGGUGUcuuGCUGCCGcguGUCCa -3'
miRNA:   3'- -CGCGGaaa----CGUUACG---CGGCGGC---CAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.