Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 48935 | 0.69 | 0.66609 |
Target: 5'- -aGCCUgaGCGAgcUGCGCgacuugggcugcgUGCUGGUCCu -3' miRNA: 3'- cgCGGAaaCGUU--ACGCG-------------GCGGCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 13386 | 0.69 | 0.667113 |
Target: 5'- -aGCCUaggggccGCAcacAUGCGCaCGCCGGaCCa -3' miRNA: 3'- cgCGGAaa-----CGU---UACGCG-GCGGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 92894 | 0.69 | 0.667113 |
Target: 5'- cGCGCCg--GUuccaAAUGCGgCGCgucaUGGUCCa -3' miRNA: 3'- -CGCGGaaaCG----UUACGCgGCG----GCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 14509 | 0.69 | 0.674258 |
Target: 5'- -gGCC---GCGGUGCGCaCGCCGGcuugcgcuuuagcgUCCa -3' miRNA: 3'- cgCGGaaaCGUUACGCG-GCGGCC--------------AGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 19492 | 0.69 | 0.697599 |
Target: 5'- cGCGCCgacgUGCAAaugguUGCGCaccuCGUCGGgcacuUCCa -3' miRNA: 3'- -CGCGGaa--ACGUU-----ACGCG----GCGGCC-----AGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 10639 | 0.69 | 0.717662 |
Target: 5'- gGCGCCgcuggGCcucguaauUGUGCgCGCCGG-CCg -3' miRNA: 3'- -CGCGGaaa--CGuu------ACGCG-GCGGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 30414 | 0.68 | 0.73743 |
Target: 5'- aGCGCC---GCGAcGCGuuGCCGGg-- -3' miRNA: 3'- -CGCGGaaaCGUUaCGCggCGGCCagg -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 76613 | 0.68 | 0.73743 |
Target: 5'- aGCGCCg--GCAugGCGUCGg-GGUCCa -3' miRNA: 3'- -CGCGGaaaCGUuaCGCGGCggCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 91807 | 0.68 | 0.747181 |
Target: 5'- gGUGCCg--GuCAcgGCGCCGCCGa--- -3' miRNA: 3'- -CGCGGaaaC-GUuaCGCGGCGGCcagg -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 14126 | 0.71 | 0.574995 |
Target: 5'- ----aUUUGCAAUGUGCgGCCGG-CCg -3' miRNA: 3'- cgcggAAACGUUACGCGgCGGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 80112 | 0.71 | 0.554789 |
Target: 5'- gGUGCCgcacacGUuGUGCGgCGCCGcGUCCa -3' miRNA: 3'- -CGCGGaaa---CGuUACGCgGCGGC-CAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 86333 | 0.71 | 0.554789 |
Target: 5'- aGCGCUUgcGCA--GCaGCCGCCGGUa- -3' miRNA: 3'- -CGCGGAaaCGUuaCG-CGGCGGCCAgg -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 7859 | 0.71 | 0.554789 |
Target: 5'- cGCGCCUUaacaccuaucUGCAggGCGCCaaaacgGCCGG-Cg -3' miRNA: 3'- -CGCGGAA----------ACGUuaCGCGG------CGGCCaGg -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 119979 | 0.72 | 0.523909 |
Target: 5'- uUGCCagUGUGAgcUGCGCCGCCGagacgacggccguGUCCa -3' miRNA: 3'- cGCGGaaACGUU--ACGCGGCGGC-------------CAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 59501 | 0.72 | 0.523909 |
Target: 5'- cGCGCUUUUaaGCGcggcaauuuuGUGUGCCGCgguagauucauacCGGUCCg -3' miRNA: 3'- -CGCGGAAA--CGU----------UACGCGGCG-------------GCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 127755 | 0.72 | 0.505309 |
Target: 5'- uGCGCC--UGCuc-GCGCUGCUGG-CCg -3' miRNA: 3'- -CGCGGaaACGuuaCGCGGCGGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 97162 | 0.72 | 0.495633 |
Target: 5'- -aGCCcga-CAcgGCGCCGCCGG-CCa -3' miRNA: 3'- cgCGGaaacGUuaCGCGGCGGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 10678 | 0.73 | 0.476542 |
Target: 5'- cGCGCCcgaagcgugGCAcguguugaguGUGCGCCGCCGcG-CCg -3' miRNA: 3'- -CGCGGaaa------CGU----------UACGCGGCGGC-CaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 119163 | 1.13 | 0.001147 |
Target: 5'- aGCGCCUUUGCAAUGCGCCGCCGGUCCc -3' miRNA: 3'- -CGCGGAAACGUUACGCGGCGGCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 114073 | 0.66 | 0.837601 |
Target: 5'- aGCGUCggcgaaaGCGGUGUcuuGCUGCCGcguGUCCa -3' miRNA: 3'- -CGCGGaaa----CGUUACG---CGGCGGC---CAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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