Results 61 - 80 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 125972 | 0.68 | 0.748034 |
Target: 5'- gCGGCGgaGCUGCaGCGCaUGAAgGCCg- -3' miRNA: 3'- aGCCGCg-CGACG-CGUG-AUUUgUGGac -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 97296 | 0.68 | 0.748034 |
Target: 5'- gUGGC-CGCgGCGCAUUgGAGCGCCg- -3' miRNA: 3'- aGCCGcGCGaCGCGUGA-UUUGUGGac -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 81972 | 0.68 | 0.748034 |
Target: 5'- aUCGGUGuCGCggucguugacGCGCACgucuGACACUUGc -3' miRNA: 3'- -AGCCGC-GCGa---------CGCGUGau--UUGUGGAC- -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 100693 | 0.68 | 0.747049 |
Target: 5'- cUCGGCgcuguuuGCGCgUGCGCGaUGAACGCgUGu -3' miRNA: 3'- -AGCCG-------CGCG-ACGCGUgAUUUGUGgAC- -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 43110 | 0.69 | 0.738138 |
Target: 5'- cCGGCG-GCUGCuGCGC-AAGCGCUUc -3' miRNA: 3'- aGCCGCgCGACG-CGUGaUUUGUGGAc -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 124281 | 0.69 | 0.73515 |
Target: 5'- cUCGGCGCGCUucaagaaugcugaaGCGCG----GCGCCg- -3' miRNA: 3'- -AGCCGCGCGA--------------CGCGUgauuUGUGGac -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 104562 | 0.69 | 0.718068 |
Target: 5'- uUCGG-GCGCUGCGCAUacguACuACUUGu -3' miRNA: 3'- -AGCCgCGCGACGCGUGauu-UG-UGGAC- -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 2194 | 0.69 | 0.718068 |
Target: 5'- -gGGaGCGCUggauaGCGCGCUAGugGCCa- -3' miRNA: 3'- agCCgCGCGA-----CGCGUGAUUugUGGac -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 19127 | 0.69 | 0.707914 |
Target: 5'- -gGGCGCGCgagcgGCGCugUuucGAACACg-- -3' miRNA: 3'- agCCGCGCGa----CGCGugA---UUUGUGgac -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 38887 | 0.69 | 0.707914 |
Target: 5'- cUCGGCggcgaGCGCUGC-CACUAuccGACGCUg- -3' miRNA: 3'- -AGCCG-----CGCGACGcGUGAU---UUGUGGac -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 74154 | 0.69 | 0.698718 |
Target: 5'- uUCGGC-CGCUGCGCGCgccagcgacucguACACUUc -3' miRNA: 3'- -AGCCGcGCGACGCGUGauu----------UGUGGAc -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 51716 | 0.69 | 0.697693 |
Target: 5'- cUCGGUGCGCgcggGUGUGCUGAggucguagauccGCACgUGc -3' miRNA: 3'- -AGCCGCGCGa---CGCGUGAUU------------UGUGgAC- -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 85611 | 0.69 | 0.687415 |
Target: 5'- aCGGcCGCGCaauuaGCGCGCUGuAGCGCUg- -3' miRNA: 3'- aGCC-GCGCGa----CGCGUGAU-UUGUGGac -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 140 | 0.7 | 0.67709 |
Target: 5'- gCGGCGCGUccgcgGCGUAC--AGCGCCa- -3' miRNA: 3'- aGCCGCGCGa----CGCGUGauUUGUGGac -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 25885 | 0.7 | 0.676055 |
Target: 5'- cCGGCGCGaccguggGCGCuggcacgcucgucGCUGGGCGCUUGc -3' miRNA: 3'- aGCCGCGCga-----CGCG-------------UGAUUUGUGGAC- -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 57361 | 0.7 | 0.669839 |
Target: 5'- aCGGCGaaaCGCUGCGCACgcugcaacaguuugcGCGCCa- -3' miRNA: 3'- aGCCGC---GCGACGCGUGauu------------UGUGGac -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 49854 | 0.7 | 0.666726 |
Target: 5'- -gGGCGCGCuUGCGgGCUGcaucguCGCUUGg -3' miRNA: 3'- agCCGCGCG-ACGCgUGAUuu----GUGGAC- -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 51141 | 0.7 | 0.656333 |
Target: 5'- cCGGCGCGCgGCugaaGCACUuuGcCGCCUu -3' miRNA: 3'- aGCCGCGCGaCG----CGUGAuuU-GUGGAc -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 104468 | 0.7 | 0.656333 |
Target: 5'- aUCaGCuGCGCUGCGUGC--AACACCUc -3' miRNA: 3'- -AGcCG-CGCGACGCGUGauUUGUGGAc -5' |
|||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 12134 | 0.7 | 0.64592 |
Target: 5'- uUCGGUGaCGgUGCGCACcuuguuGCACCg- -3' miRNA: 3'- -AGCCGC-GCgACGCGUGauu---UGUGGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home