Results 41 - 60 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 11017 | 0.67 | 0.81381 |
Target: 5'- -aGGCGCGCcGUGCAacccGCACCc- -3' miRNA: 3'- agCCGCGCGaCGCGUgauuUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 83857 | 0.67 | 0.81381 |
Target: 5'- -aGGCGCGCcagGCGCuggagGAGCGCUa- -3' miRNA: 3'- agCCGCGCGa--CGCGuga--UUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 90868 | 0.67 | 0.81381 |
Target: 5'- gUGGaCGCGUUGCGCggcauACUGucguACGCCa- -3' miRNA: 3'- aGCC-GCGCGACGCG-----UGAUu---UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 91091 | 0.67 | 0.81381 |
Target: 5'- --uGCGCGCUaGCGCGCgcGACgACCg- -3' miRNA: 3'- agcCGCGCGA-CGCGUGauUUG-UGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 38355 | 0.67 | 0.81381 |
Target: 5'- gUCGcGCGCGCUaGCGCGCau--UGCCa- -3' miRNA: 3'- -AGC-CGCGCGA-CGCGUGauuuGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 7838 | 0.67 | 0.81381 |
Target: 5'- aCcGCGCGCUGCagcagaacccGCGCcuuAACACCUa -3' miRNA: 3'- aGcCGCGCGACG----------CGUGau-UUGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 43136 | 0.67 | 0.81381 |
Target: 5'- aCGGCGcCGCgGCGCGCcgcacguuuuUGAACGCg-- -3' miRNA: 3'- aGCCGC-GCGaCGCGUG----------AUUUGUGgac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 86362 | 0.67 | 0.812922 |
Target: 5'- aUCGGCGCGaccccaagcacCUGCaGCGCcuuauccaacuuaUGAACGCCg- -3' miRNA: 3'- -AGCCGCGC-----------GACG-CGUG-------------AUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 32455 | 0.67 | 0.804855 |
Target: 5'- gCGGCGCagccGCUGCGUgucgcCUuuGCACCa- -3' miRNA: 3'- aGCCGCG----CGACGCGu----GAuuUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 9511 | 0.67 | 0.802136 |
Target: 5'- gCGGCGgaauaucgaugcccUGCUcGCGCACUAgcuuauacGACACCa- -3' miRNA: 3'- aGCCGC--------------GCGA-CGCGUGAU--------UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 61630 | 0.67 | 0.795737 |
Target: 5'- uUUGGCGcCGCgcagccaGCGCGCgccAACGCCg- -3' miRNA: 3'- -AGCCGC-GCGa------CGCGUGau-UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 5371 | 0.67 | 0.795737 |
Target: 5'- aUCaGCGCGCcGUGCAuCUgcacGAGCACUUGc -3' miRNA: 3'- -AGcCGCGCGaCGCGU-GA----UUUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 92930 | 0.67 | 0.795737 |
Target: 5'- gCGGCGC-CUGCGUAUUGuuaACCg- -3' miRNA: 3'- aGCCGCGcGACGCGUGAUuugUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 111596 | 0.68 | 0.786465 |
Target: 5'- aCGGCGCGCgGUGuUACgc-GCGCCg- -3' miRNA: 3'- aGCCGCGCGaCGC-GUGauuUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 99397 | 0.68 | 0.786465 |
Target: 5'- aCGGCGCGuUUGCGUucACUAcuGACgAUCUGu -3' miRNA: 3'- aGCCGCGC-GACGCG--UGAU--UUG-UGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 17408 | 0.68 | 0.786465 |
Target: 5'- -gGGCGCGCUGgGCAacgauUACCg- -3' miRNA: 3'- agCCGCGCGACgCGUgauuuGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 110876 | 0.68 | 0.77705 |
Target: 5'- -aGGCGCGUguacaGCGaacuGCUGgccAGCGCCUGg -3' miRNA: 3'- agCCGCGCGa----CGCg---UGAU---UUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 91343 | 0.68 | 0.77705 |
Target: 5'- gCGuGCGCGCUaGCGUGCUGuugcgcgucGCGCCg- -3' miRNA: 3'- aGC-CGCGCGA-CGCGUGAUu--------UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 118948 | 0.68 | 0.77705 |
Target: 5'- uUCGGCGUug-GCGCACaccGACGCCa- -3' miRNA: 3'- -AGCCGCGcgaCGCGUGau-UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 112341 | 0.68 | 0.7675 |
Target: 5'- -aGGCGCGCcGCGCGCacagcAACACg-- -3' miRNA: 3'- agCCGCGCGaCGCGUGau---UUGUGgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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