miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 121900 0.67 0.839616
Target:  5'- --cGCGUGCUGgGCGCUcuGAGCACa-- -3'
miRNA:   3'- agcCGCGCGACgCGUGA--UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 94845 0.67 0.839616
Target:  5'- cCGGUGgGUUGCGCGCcgcacGGACACa-- -3'
miRNA:   3'- aGCCGCgCGACGCGUGa----UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 53167 0.67 0.839616
Target:  5'- aCGGCGCGCgGCGUuuCUAccuuuAACAgCCUu -3'
miRNA:   3'- aGCCGCGCGaCGCGu-GAU-----UUGU-GGAc -5'
21190 5' -55.9 NC_004778.3 + 34420 0.67 0.831199
Target:  5'- cCGGCaGCGCgGCGUGCccguACugCUGu -3'
miRNA:   3'- aGCCG-CGCGaCGCGUGauu-UGugGAC- -5'
21190 5' -55.9 NC_004778.3 + 23993 0.67 0.828637
Target:  5'- aUCGGC-CGCUGCGUgaccguuaagggucACUAu-CGCCUc -3'
miRNA:   3'- -AGCCGcGCGACGCG--------------UGAUuuGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 34315 0.67 0.828637
Target:  5'- cCGGCGCguGCUggaacuggugcaggGCGUGCUcGACACCa- -3'
miRNA:   3'- aGCCGCG--CGA--------------CGCGUGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 95793 0.67 0.826059
Target:  5'- cCGGcCGCGCUGCGCcccguggauucuuuCUAAACaacgACCg- -3'
miRNA:   3'- aGCC-GCGCGACGCGu-------------GAUUUG----UGGac -5'
21190 5' -55.9 NC_004778.3 + 117675 0.67 0.822594
Target:  5'- aUGGCGUGCUGCuguGCGCcgUGGACcgGCCg- -3'
miRNA:   3'- aGCCGCGCGACG---CGUG--AUUUG--UGGac -5'
21190 5' -55.9 NC_004778.3 + 49393 0.67 0.822594
Target:  5'- cCGGCcaGCGCcGCGUACUcgguauACugCUGa -3'
miRNA:   3'- aGCCG--CGCGaCGCGUGAuu----UGugGAC- -5'
21190 5' -55.9 NC_004778.3 + 56477 0.67 0.822594
Target:  5'- cUCGGaCGaaguggagGUUGCGC-CUGAGCACCg- -3'
miRNA:   3'- -AGCC-GCg-------CGACGCGuGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 8801 0.67 0.822594
Target:  5'- gCGGCGagGCggcggGCGCGCUcagcgaauGGCGCCUa -3'
miRNA:   3'- aGCCGCg-CGa----CGCGUGAu-------UUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 82049 0.67 0.822594
Target:  5'- aCGcGCGCGCgUGCGaCACgucGCGCCc- -3'
miRNA:   3'- aGC-CGCGCG-ACGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 64678 0.67 0.822594
Target:  5'- aUCGGCGCcgUGUGCACgguuuauGCACgUGa -3'
miRNA:   3'- -AGCCGCGcgACGCGUGauu----UGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 122020 0.67 0.822594
Target:  5'- gUGGCGCcgacaagcaGCUGCGU-UUAAACGCCg- -3'
miRNA:   3'- aGCCGCG---------CGACGCGuGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 63025 0.67 0.822594
Target:  5'- -aGGUcgGCGCUGaCGCAUUAAaauguACACUUGc -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGAUU-----UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 64852 0.67 0.822594
Target:  5'- gUCGGCGCaCUGCGcCACacaugcuCACCg- -3'
miRNA:   3'- -AGCCGCGcGACGC-GUGauuu---GUGGac -5'
21190 5' -55.9 NC_004778.3 + 81460 0.67 0.822594
Target:  5'- --uGCGCGCgUGCGCGCguacuGGCGCgUGc -3'
miRNA:   3'- agcCGCGCG-ACGCGUGau---UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 81697 0.67 0.822594
Target:  5'- gUCGGCGUGUaUGCGCcacaagGCUu-GCGCCa- -3'
miRNA:   3'- -AGCCGCGCG-ACGCG------UGAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 96502 0.67 0.817345
Target:  5'- gCGGCGUuguacgcccccaaacGCggGCGCAaaauggGAGCGCCUGc -3'
miRNA:   3'- aGCCGCG---------------CGa-CGCGUga----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 124892 0.67 0.814697
Target:  5'- aCaGCGCGCUGgGCGCcgugauagauuuaacGAACACCa- -3'
miRNA:   3'- aGcCGCGCGACgCGUGa--------------UUUGUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.