miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 21249 0.76 0.32703
Target:  5'- -aGGCGCGUUGCGCAUUAcauACAUUUGc -3'
miRNA:   3'- agCCGCGCGACGCGUGAUu--UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 21892 0.73 0.5025
Target:  5'- aCGGCGCGCUGCucuGCGgUAagcGACGCgUGc -3'
miRNA:   3'- aGCCGCGCGACG---CGUgAU---UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 22986 0.71 0.614648
Target:  5'- uUUGcGCGCGCaGCGCGCUcAGCGCgUUGg -3'
miRNA:   3'- -AGC-CGCGCGaCGCGUGAuUUGUG-GAC- -5'
21190 5' -55.9 NC_004778.3 + 23993 0.67 0.828637
Target:  5'- aUCGGC-CGCUGCGUgaccguuaagggucACUAu-CGCCUc -3'
miRNA:   3'- -AGCCGcGCGACGCG--------------UGAUuuGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 25885 0.7 0.676055
Target:  5'- cCGGCGCGaccguggGCGCuggcacgcucgucGCUGGGCGCUUGc -3'
miRNA:   3'- aGCCGCGCga-----CGCG-------------UGAUUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 29337 0.74 0.417811
Target:  5'- gCGGCGCGCgcugggGUGCGCcAAGCGgCUGu -3'
miRNA:   3'- aGCCGCGCGa-----CGCGUGaUUUGUgGAC- -5'
21190 5' -55.9 NC_004778.3 + 32455 0.67 0.804855
Target:  5'- gCGGCGCagccGCUGCGUgucgcCUuuGCACCa- -3'
miRNA:   3'- aGCCGCG----CGACGCGu----GAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 33089 0.66 0.871253
Target:  5'- gCGGCcCGCUGcCGCGCU--ACACgUa -3'
miRNA:   3'- aGCCGcGCGAC-GCGUGAuuUGUGgAc -5'
21190 5' -55.9 NC_004778.3 + 33670 0.81 0.177154
Target:  5'- cCGGCGCGCUGcCGCGCggauAGCGCCc- -3'
miRNA:   3'- aGCCGCGCGAC-GCGUGau--UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 33831 0.74 0.417811
Target:  5'- gCGGCaGC-CUGCGCGCUcAACGCCg- -3'
miRNA:   3'- aGCCG-CGcGACGCGUGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 34315 0.67 0.828637
Target:  5'- cCGGCGCguGCUggaacuggugcaggGCGUGCUcGACACCa- -3'
miRNA:   3'- aGCCGCG--CGA--------------CGCGUGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 34420 0.67 0.831199
Target:  5'- cCGGCaGCGCgGCGUGCccguACugCUGu -3'
miRNA:   3'- aGCCG-CGCGaCGCGUGauu-UGugGAC- -5'
21190 5' -55.9 NC_004778.3 + 34441 0.72 0.522352
Target:  5'- gUCGGCGCaCgGCGCGCgcggaaaGAACGCCUc -3'
miRNA:   3'- -AGCCGCGcGaCGCGUGa------UUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 34453 0.66 0.878622
Target:  5'- -gGGCaCGCUGCGCGuCgagGAgcGCACCg- -3'
miRNA:   3'- agCCGcGCGACGCGU-Ga--UU--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 36549 0.73 0.463842
Target:  5'- cCGGCuCGCUGCGgcucaaGCUGGACGCCg- -3'
miRNA:   3'- aGCCGcGCGACGCg-----UGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 38146 0.74 0.445103
Target:  5'- -aGGCcCGCUGCGcCGCUcGACACCUc -3'
miRNA:   3'- agCCGcGCGACGC-GUGAuUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 38355 0.67 0.81381
Target:  5'- gUCGcGCGCGCUaGCGCGCau--UGCCa- -3'
miRNA:   3'- -AGC-CGCGCGA-CGCGUGauuuGUGGac -5'
21190 5' -55.9 NC_004778.3 + 38887 0.69 0.707914
Target:  5'- cUCGGCggcgaGCGCUGC-CACUAuccGACGCUg- -3'
miRNA:   3'- -AGCCG-----CGCGACGcGUGAU---UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 43110 0.69 0.738138
Target:  5'- cCGGCG-GCUGCuGCGC-AAGCGCUUc -3'
miRNA:   3'- aGCCGCgCGACG-CGUGaUUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 43136 0.67 0.81381
Target:  5'- aCGGCGcCGCgGCGCGCcgcacguuuuUGAACGCg-- -3'
miRNA:   3'- aGCCGC-GCGaCGCGUG----------AUUUGUGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.