miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 140 0.7 0.67709
Target:  5'- gCGGCGCGUccgcgGCGUAC--AGCGCCa- -3'
miRNA:   3'- aGCCGCGCGa----CGCGUGauUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 733 0.66 0.878622
Target:  5'- --aGCGCaCUGUGCACgu--CACCUGc -3'
miRNA:   3'- agcCGCGcGACGCGUGauuuGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 2194 0.69 0.718068
Target:  5'- -gGGaGCGCUggauaGCGCGCUAGugGCCa- -3'
miRNA:   3'- agCCgCGCGA-----CGCGUGAUUugUGGac -5'
21190 5' -55.9 NC_004778.3 + 3229 0.66 0.885762
Target:  5'- gUGGCGCGCcGUGauCAC-GGACACCa- -3'
miRNA:   3'- aGCCGCGCGaCGC--GUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 5371 0.67 0.795737
Target:  5'- aUCaGCGCGCcGUGCAuCUgcacGAGCACUUGc -3'
miRNA:   3'- -AGcCGCGCGaCGCGU-GA----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 7153 0.77 0.290873
Target:  5'- cUCGGCGgGCgGCGCGCcGAGCACUa- -3'
miRNA:   3'- -AGCCGCgCGaCGCGUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 7838 0.67 0.81381
Target:  5'- aCcGCGCGCUGCagcagaacccGCGCcuuAACACCUa -3'
miRNA:   3'- aGcCGCGCGACG----------CGUGau-UUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 8801 0.67 0.822594
Target:  5'- gCGGCGagGCggcggGCGCGCUcagcgaauGGCGCCUa -3'
miRNA:   3'- aGCCGCg-CGa----CGCGUGAu-------UUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 9013 0.66 0.871253
Target:  5'- gCGGCGgGCUGCauuuguCGC-AGGCGCCg- -3'
miRNA:   3'- aGCCGCgCGACGc-----GUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 9511 0.67 0.802136
Target:  5'- gCGGCGgaauaucgaugcccUGCUcGCGCACUAgcuuauacGACACCa- -3'
miRNA:   3'- aGCCGC--------------GCGA-CGCGUGAU--------UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 9905 0.66 0.885762
Target:  5'- -gGGCGCGgUGUGCGCUuuaguGAAaACCg- -3'
miRNA:   3'- agCCGCGCgACGCGUGA-----UUUgUGGac -5'
21190 5' -55.9 NC_004778.3 + 10491 0.66 0.885762
Target:  5'- cUGGCGuCGgUGUGCGCc-AACGCCg- -3'
miRNA:   3'- aGCCGC-GCgACGCGUGauUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 11017 0.67 0.81381
Target:  5'- -aGGCGCGCcGUGCAacccGCACCc- -3'
miRNA:   3'- agCCGCGCGaCGCGUgauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 11638 0.66 0.871253
Target:  5'- cUGGUGCGCcgcuUGCGCuugUUGGACACUa- -3'
miRNA:   3'- aGCCGCGCG----ACGCGu--GAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 12134 0.7 0.64592
Target:  5'- uUCGGUGaCGgUGCGCACcuuguuGCACCg- -3'
miRNA:   3'- -AGCCGC-GCgACGCGUGauu---UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 15703 0.78 0.245622
Target:  5'- aUGGCGCGCUGCuGCGCgagauGCGCCa- -3'
miRNA:   3'- aGCCGCGCGACG-CGUGauu--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 17106 0.66 0.862891
Target:  5'- cUGuGCGCGCgGCGCGcCUAccguggcAACGCCg- -3'
miRNA:   3'- aGC-CGCGCGaCGCGU-GAU-------UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 17408 0.68 0.786465
Target:  5'- -gGGCGCGCUGgGCAacgauUACCg- -3'
miRNA:   3'- agCCGCGCGACgCGUgauuuGUGGac -5'
21190 5' -55.9 NC_004778.3 + 17844 0.66 0.885059
Target:  5'- cUCGGCGCGCguaacaccGCGCGCcguccgUGAcuuuggcGCGCCc- -3'
miRNA:   3'- -AGCCGCGCGa-------CGCGUG------AUU-------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 19127 0.69 0.707914
Target:  5'- -gGGCGCGCgagcgGCGCugUuucGAACACg-- -3'
miRNA:   3'- agCCGCGCGa----CGCGugA---UUUGUGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.