miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 19127 0.69 0.707914
Target:  5'- -gGGCGCGCgagcgGCGCugUuucGAACACg-- -3'
miRNA:   3'- agCCGCGCGa----CGCGugA---UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 95004 0.71 0.614648
Target:  5'- cCGcGCGCGCcGUGCGCcGAcgggcagguGCGCCUGg -3'
miRNA:   3'- aGC-CGCGCGaCGCGUGaUU---------UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 126938 0.71 0.625069
Target:  5'- uUCGGCcaCGCUGCGCucgaauggguGCUuGACACCg- -3'
miRNA:   3'- -AGCCGc-GCGACGCG----------UGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 110104 0.71 0.625069
Target:  5'- aCGGCGUGC-GCGC-C-GAGCGCUUGg -3'
miRNA:   3'- aGCCGCGCGaCGCGuGaUUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 51141 0.7 0.656333
Target:  5'- cCGGCGCGCgGCugaaGCACUuuGcCGCCUu -3'
miRNA:   3'- aGCCGCGCGaCG----CGUGAuuU-GUGGAc -5'
21190 5' -55.9 NC_004778.3 + 104468 0.7 0.656333
Target:  5'- aUCaGCuGCGCUGCGUGC--AACACCUc -3'
miRNA:   3'- -AGcCG-CGCGACGCGUGauUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 49854 0.7 0.666726
Target:  5'- -gGGCGCGCuUGCGgGCUGcaucguCGCUUGg -3'
miRNA:   3'- agCCGCGCG-ACGCgUGAUuu----GUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 57361 0.7 0.669839
Target:  5'- aCGGCGaaaCGCUGCGCACgcugcaacaguuugcGCGCCa- -3'
miRNA:   3'- aGCCGC---GCGACGCGUGauu------------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 25885 0.7 0.676055
Target:  5'- cCGGCGCGaccguggGCGCuggcacgcucgucGCUGGGCGCUUGc -3'
miRNA:   3'- aGCCGCGCga-----CGCG-------------UGAUUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 108728 0.72 0.5425
Target:  5'- gUGGCaGCGCUGCGuCGCg--GCACCa- -3'
miRNA:   3'- aGCCG-CGCGACGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 61375 0.73 0.5025
Target:  5'- cCGGCGCGU--CGuCGCUGAGCGCCa- -3'
miRNA:   3'- aGCCGCGCGacGC-GUGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 118743 0.73 0.482985
Target:  5'- cUCGGCGCgGCgGCGCACaccAACACgUGc -3'
miRNA:   3'- -AGCCGCG-CGaCGCGUGau-UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 77363 0.77 0.277311
Target:  5'- gUGGCGCGCcGCGCGCUGGugcaaugcgcacGCGCCg- -3'
miRNA:   3'- aGCCGCGCGaCGCGUGAUU------------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 7153 0.77 0.290873
Target:  5'- cUCGGCGgGCgGCGCGCcGAGCACUa- -3'
miRNA:   3'- -AGCCGCgCGaCGCGUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 29337 0.74 0.417811
Target:  5'- gCGGCGCGCgcugggGUGCGCcAAGCGgCUGu -3'
miRNA:   3'- aGCCGCGCGa-----CGCGUGaUUUGUgGAC- -5'
21190 5' -55.9 NC_004778.3 + 33831 0.74 0.417811
Target:  5'- gCGGCaGC-CUGCGCGCUcAACGCCg- -3'
miRNA:   3'- aGCCG-CGcGACGCGUGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 106458 0.74 0.417811
Target:  5'- cUGaGCGCGCUGCGCGCgcaAAACGCg-- -3'
miRNA:   3'- aGC-CGCGCGACGCGUGa--UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 124082 0.74 0.426796
Target:  5'- aCGGCGCGCugaUGCGCGCgguuGGCgGCCUc -3'
miRNA:   3'- aGCCGCGCG---ACGCGUGau--UUG-UGGAc -5'
21190 5' -55.9 NC_004778.3 + 38146 0.74 0.445103
Target:  5'- -aGGCcCGCUGCGcCGCUcGACACCUc -3'
miRNA:   3'- agCCGcGCGACGC-GUGAuUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 53730 0.73 0.473365
Target:  5'- aUGcGCGCGCUGCGCGCaaauuAUACCg- -3'
miRNA:   3'- aGC-CGCGCGACGCGUGauu--UGUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.