miRNA display CGI


Results 1 - 20 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 119198 1.08 0.002547
Target:  5'- aUCGGCGCGCUGCGCACUAAACACCUGc -3'
miRNA:   3'- -AGCCGCGCGACGCGUGAUUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 33670 0.81 0.177154
Target:  5'- cCGGCGCGCUGcCGCGCggauAGCGCCc- -3'
miRNA:   3'- aGCCGCGCGAC-GCGUGau--UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 128036 0.8 0.191272
Target:  5'- aUCGGCGCGCUGCuGCACUuuuacaggauGGAUGCCa- -3'
miRNA:   3'- -AGCCGCGCGACG-CGUGA----------UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 15703 0.78 0.245622
Target:  5'- aUGGCGCGCUGCuGCGCgagauGCGCCa- -3'
miRNA:   3'- aGCCGCGCGACG-CGUGauu--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 77363 0.77 0.277311
Target:  5'- gUGGCGCGCcGCGCGCUGGugcaaugcgcacGCGCCg- -3'
miRNA:   3'- aGCCGCGCGaCGCGUGAUU------------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 7153 0.77 0.290873
Target:  5'- cUCGGCGgGCgGCGCGCcGAGCACUa- -3'
miRNA:   3'- -AGCCGCgCGaCGCGUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 21249 0.76 0.32703
Target:  5'- -aGGCGCGUUGCGCAUUAcauACAUUUGc -3'
miRNA:   3'- agCCGCGCGACGCGUGAUu--UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 33831 0.74 0.417811
Target:  5'- gCGGCaGC-CUGCGCGCUcAACGCCg- -3'
miRNA:   3'- aGCCG-CGcGACGCGUGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 106458 0.74 0.417811
Target:  5'- cUGaGCGCGCUGCGCGCgcaAAACGCg-- -3'
miRNA:   3'- aGC-CGCGCGACGCGUGa--UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 29337 0.74 0.417811
Target:  5'- gCGGCGCGCgcugggGUGCGCcAAGCGgCUGu -3'
miRNA:   3'- aGCCGCGCGa-----CGCGUGaUUUGUgGAC- -5'
21190 5' -55.9 NC_004778.3 + 91139 0.74 0.425892
Target:  5'- cUCGGCGCGCggucgcgUGCGCGCU-GGCGCa-- -3'
miRNA:   3'- -AGCCGCGCG-------ACGCGUGAuUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 124082 0.74 0.426796
Target:  5'- aCGGCGCGCugaUGCGCGCgguuGGCgGCCUc -3'
miRNA:   3'- aGCCGCGCG---ACGCGUGau--UUG-UGGAc -5'
21190 5' -55.9 NC_004778.3 + 52065 0.74 0.426796
Target:  5'- cCGGCGCG-UGCGCAUU--GCACCa- -3'
miRNA:   3'- aGCCGCGCgACGCGUGAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 38146 0.74 0.445103
Target:  5'- -aGGCcCGCUGCGcCGCUcGACACCUc -3'
miRNA:   3'- agCCGcGCGACGC-GUGAuUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 86310 0.73 0.463842
Target:  5'- gCGGCGCGCcGCgGCGCcgucgAAGCGCUUGc -3'
miRNA:   3'- aGCCGCGCGaCG-CGUGa----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 36549 0.73 0.463842
Target:  5'- cCGGCuCGCUGCGgcucaaGCUGGACGCCg- -3'
miRNA:   3'- aGCCGcGCGACGCg-----UGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 53730 0.73 0.473365
Target:  5'- aUGcGCGCGCUGCGCGCaaauuAUACCg- -3'
miRNA:   3'- aGC-CGCGCGACGCGUGauu--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 118743 0.73 0.482985
Target:  5'- cUCGGCGCgGCgGCGCACaccAACACgUGc -3'
miRNA:   3'- -AGCCGCG-CGaCGCGUGau-UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 21892 0.73 0.5025
Target:  5'- aCGGCGCGCUGCucuGCGgUAagcGACGCgUGc -3'
miRNA:   3'- aGCCGCGCGACG---CGUgAU---UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 61375 0.73 0.5025
Target:  5'- cCGGCGCGU--CGuCGCUGAGCGCCa- -3'
miRNA:   3'- aGCCGCGCGacGC-GUGAUUUGUGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.