miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 128036 0.8 0.191272
Target:  5'- aUCGGCGCGCUGCuGCACUuuuacaggauGGAUGCCa- -3'
miRNA:   3'- -AGCCGCGCGACG-CGUGA----------UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 126938 0.71 0.625069
Target:  5'- uUCGGCcaCGCUGCGCucgaauggguGCUuGACACCg- -3'
miRNA:   3'- -AGCCGc-GCGACGCG----------UGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 125972 0.68 0.748034
Target:  5'- gCGGCGgaGCUGCaGCGCaUGAAgGCCg- -3'
miRNA:   3'- aGCCGCg-CGACG-CGUG-AUUUgUGGac -5'
21190 5' -55.9 NC_004778.3 + 124892 0.67 0.814697
Target:  5'- aCaGCGCGCUGgGCGCcgugauagauuuaacGAACACCa- -3'
miRNA:   3'- aGcCGCGCGACgCGUGa--------------UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 124281 0.69 0.73515
Target:  5'- cUCGGCGCGCUucaagaaugcugaaGCGCG----GCGCCg- -3'
miRNA:   3'- -AGCCGCGCGA--------------CGCGUgauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 124082 0.74 0.426796
Target:  5'- aCGGCGCGCugaUGCGCGCgguuGGCgGCCUc -3'
miRNA:   3'- aGCCGCGCG---ACGCGUGau--UUG-UGGAc -5'
21190 5' -55.9 NC_004778.3 + 122020 0.67 0.822594
Target:  5'- gUGGCGCcgacaagcaGCUGCGU-UUAAACGCCg- -3'
miRNA:   3'- aGCCGCG---------CGACGCGuGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 121900 0.67 0.839616
Target:  5'- --cGCGUGCUGgGCGCUcuGAGCACa-- -3'
miRNA:   3'- agcCGCGCGACgCGUGA--UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 119918 0.72 0.538449
Target:  5'- aCGGCGCGCaaaucgucgauacGCGCGCgguACGCCUc -3'
miRNA:   3'- aGCCGCGCGa------------CGCGUGauuUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 119198 1.08 0.002547
Target:  5'- aUCGGCGCGCUGCGCACUAAACACCUGc -3'
miRNA:   3'- -AGCCGCGCGACGCGUGAUUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 118948 0.68 0.77705
Target:  5'- uUCGGCGUug-GCGCACaccGACGCCa- -3'
miRNA:   3'- -AGCCGCGcgaCGCGUGau-UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 118864 0.66 0.885762
Target:  5'- aCGGCGCGCgcaCGCaACUGAGgACaaaUGc -3'
miRNA:   3'- aGCCGCGCGac-GCG-UGAUUUgUGg--AC- -5'
21190 5' -55.9 NC_004778.3 + 118743 0.73 0.482985
Target:  5'- cUCGGCGCgGCgGCGCACaccAACACgUGc -3'
miRNA:   3'- -AGCCGCG-CGaCGCGUGau-UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 117675 0.67 0.822594
Target:  5'- aUGGCGUGCUGCuguGCGCcgUGGACcgGCCg- -3'
miRNA:   3'- aGCCGCGCGACG---CGUG--AUUUG--UGGac -5'
21190 5' -55.9 NC_004778.3 + 115082 0.66 0.878622
Target:  5'- gUCGcGCGCGUUGCaGCGCauuucGAAcCGCCUc -3'
miRNA:   3'- -AGC-CGCGCGACG-CGUGa----UUU-GUGGAc -5'
21190 5' -55.9 NC_004778.3 + 112341 0.68 0.7675
Target:  5'- -aGGCGCGCcGCGCGCacagcAACACg-- -3'
miRNA:   3'- agCCGCGCGaCGCGUGau---UUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 111596 0.68 0.786465
Target:  5'- aCGGCGCGCgGUGuUACgc-GCGCCg- -3'
miRNA:   3'- aGCCGCGCGaCGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 110876 0.68 0.77705
Target:  5'- -aGGCGCGUguacaGCGaacuGCUGgccAGCGCCUGg -3'
miRNA:   3'- agCCGCGCGa----CGCg---UGAU---UUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 110104 0.71 0.625069
Target:  5'- aCGGCGUGC-GCGC-C-GAGCGCUUGg -3'
miRNA:   3'- aGCCGCGCGaCGCGuGaUUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 109638 0.66 0.863662
Target:  5'- -aGGUcgGCGCUGaCGCACguuaaagauAGCACUUGu -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGau-------UUGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.