miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 49393 0.67 0.822594
Target:  5'- cCGGCcaGCGCcGCGUACUcgguauACugCUGa -3'
miRNA:   3'- aGCCG--CGCGaCGCGUGAuu----UGugGAC- -5'
21190 5' -55.9 NC_004778.3 + 49854 0.7 0.666726
Target:  5'- -gGGCGCGCuUGCGgGCUGcaucguCGCUUGg -3'
miRNA:   3'- agCCGCGCG-ACGCgUGAUuu----GUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 51141 0.7 0.656333
Target:  5'- cCGGCGCGCgGCugaaGCACUuuGcCGCCUu -3'
miRNA:   3'- aGCCGCGCGaCG----CGUGAuuU-GUGGAc -5'
21190 5' -55.9 NC_004778.3 + 51716 0.69 0.697693
Target:  5'- cUCGGUGCGCgcggGUGUGCUGAggucguagauccGCACgUGc -3'
miRNA:   3'- -AGCCGCGCGa---CGCGUGAUU------------UGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 52065 0.74 0.426796
Target:  5'- cCGGCGCG-UGCGCAUU--GCACCa- -3'
miRNA:   3'- aGCCGCGCgACGCGUGAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 53167 0.67 0.839616
Target:  5'- aCGGCGCGCgGCGUuuCUAccuuuAACAgCCUu -3'
miRNA:   3'- aGCCGCGCGaCGCGu-GAU-----UUGU-GGAc -5'
21190 5' -55.9 NC_004778.3 + 53730 0.73 0.473365
Target:  5'- aUGcGCGCGCUGCGCGCaaauuAUACCg- -3'
miRNA:   3'- aGC-CGCGCGACGCGUGauu--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 56477 0.67 0.822594
Target:  5'- cUCGGaCGaaguggagGUUGCGC-CUGAGCACCg- -3'
miRNA:   3'- -AGCC-GCg-------CGACGCGuGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 57361 0.7 0.669839
Target:  5'- aCGGCGaaaCGCUGCGCACgcugcaacaguuugcGCGCCa- -3'
miRNA:   3'- aGCCGC---GCGACGCGUGauu------------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 58379 0.66 0.878622
Target:  5'- -aGGC-CGCUGUGCagcgGCUGGACGCg-- -3'
miRNA:   3'- agCCGcGCGACGCG----UGAUUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 59470 0.66 0.855855
Target:  5'- gCGGCGgGCgcGCGCAUUcgGUACCUa -3'
miRNA:   3'- aGCCGCgCGa-CGCGUGAuuUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 61375 0.73 0.5025
Target:  5'- cCGGCGCGU--CGuCGCUGAGCGCCa- -3'
miRNA:   3'- aGCCGCGCGacGC-GUGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 61630 0.67 0.795737
Target:  5'- uUUGGCGcCGCgcagccaGCGCGCgccAACGCCg- -3'
miRNA:   3'- -AGCCGC-GCGa------CGCGUGau-UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 61974 0.66 0.885762
Target:  5'- gUCGGgGCGCuUGC-CGCU--GCGCgUGg -3'
miRNA:   3'- -AGCCgCGCG-ACGcGUGAuuUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 63025 0.67 0.822594
Target:  5'- -aGGUcgGCGCUGaCGCAUUAAaauguACACUUGc -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGAUU-----UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 63694 0.71 0.573176
Target:  5'- cCGGCuCGCUGCGC-C-AAACGCCg- -3'
miRNA:   3'- aGCCGcGCGACGCGuGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 64678 0.67 0.822594
Target:  5'- aUCGGCGCcgUGUGCACgguuuauGCACgUGa -3'
miRNA:   3'- -AGCCGCGcgACGCGUGauu----UGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 64852 0.67 0.822594
Target:  5'- gUCGGCGCaCUGCGcCACacaugcuCACCg- -3'
miRNA:   3'- -AGCCGCGcGACGC-GUGauuu---GUGGac -5'
21190 5' -55.9 NC_004778.3 + 65493 0.66 0.878622
Target:  5'- gUUGGUGCGCUucGCGUAUUcagucAGCACCc- -3'
miRNA:   3'- -AGCCGCGCGA--CGCGUGAu----UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 67807 0.71 0.614648
Target:  5'- gUUGGCGCGCgcugGCuGCGCggcgccAAACGCUUGc -3'
miRNA:   3'- -AGCCGCGCGa---CG-CGUGa-----UUUGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.