miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 103902 0.66 0.885762
Target:  5'- cUGGCGCGCgaUGCGCGaUAAGCGgUa- -3'
miRNA:   3'- aGCCGCGCG--ACGCGUgAUUUGUgGac -5'
21190 5' -55.9 NC_004778.3 + 118948 0.68 0.77705
Target:  5'- uUCGGCGUug-GCGCACaccGACGCCa- -3'
miRNA:   3'- -AGCCGCGcgaCGCGUGau-UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 99397 0.68 0.786465
Target:  5'- aCGGCGCGuUUGCGUucACUAcuGACgAUCUGu -3'
miRNA:   3'- aGCCGCGC-GACGCG--UGAU--UUG-UGGAC- -5'
21190 5' -55.9 NC_004778.3 + 124892 0.67 0.814697
Target:  5'- aCaGCGCGCUGgGCGCcgugauagauuuaacGAACACCa- -3'
miRNA:   3'- aGcCGCGCGACgCGUGa--------------UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 23993 0.67 0.828637
Target:  5'- aUCGGC-CGCUGCGUgaccguuaagggucACUAu-CGCCUc -3'
miRNA:   3'- -AGCCGcGCGACGCG--------------UGAUuuGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 2194 0.69 0.718068
Target:  5'- -gGGaGCGCUggauaGCGCGCUAGugGCCa- -3'
miRNA:   3'- agCCgCGCGA-----CGCGUGAUUugUGGac -5'
21190 5' -55.9 NC_004778.3 + 112341 0.68 0.7675
Target:  5'- -aGGCGCGCcGCGCGCacagcAACACg-- -3'
miRNA:   3'- agCCGCGCGaCGCGUGau---UUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 91590 0.66 0.871253
Target:  5'- gUCuGCGCG-UGCGCGucgaUAAGCACCa- -3'
miRNA:   3'- -AGcCGCGCgACGCGUg---AUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 11017 0.67 0.81381
Target:  5'- -aGGCGCGCcGUGCAacccGCACCc- -3'
miRNA:   3'- agCCGCGCGaCGCGUgauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 90868 0.67 0.81381
Target:  5'- gUGGaCGCGUUGCGCggcauACUGucguACGCCa- -3'
miRNA:   3'- aGCC-GCGCGACGCG-----UGAUu---UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 733 0.66 0.878622
Target:  5'- --aGCGCaCUGUGCACgu--CACCUGc -3'
miRNA:   3'- agcCGCGcGACGCGUGauuuGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 58379 0.66 0.878622
Target:  5'- -aGGC-CGCUGUGCagcgGCUGGACGCg-- -3'
miRNA:   3'- agCCGcGCGACGCG----UGAUUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 74154 0.69 0.698718
Target:  5'- uUCGGC-CGCUGCGCGCgccagcgacucguACACUUc -3'
miRNA:   3'- -AGCCGcGCGACGCGUGauu----------UGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 104562 0.69 0.718068
Target:  5'- uUCGG-GCGCUGCGCAUacguACuACUUGu -3'
miRNA:   3'- -AGCCgCGCGACGCGUGauu-UG-UGGAC- -5'
21190 5' -55.9 NC_004778.3 + 92930 0.67 0.795737
Target:  5'- gCGGCGC-CUGCGUAUUGuuaACCg- -3'
miRNA:   3'- aGCCGCGcGACGCGUGAUuugUGGac -5'
21190 5' -55.9 NC_004778.3 + 82049 0.67 0.822594
Target:  5'- aCGcGCGCGCgUGCGaCACgucGCGCCc- -3'
miRNA:   3'- aGC-CGCGCG-ACGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 64678 0.67 0.822594
Target:  5'- aUCGGCGCcgUGUGCACgguuuauGCACgUGa -3'
miRNA:   3'- -AGCCGCGcgACGCGUGauu----UGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 115082 0.66 0.878622
Target:  5'- gUCGcGCGCGUUGCaGCGCauuucGAAcCGCCUc -3'
miRNA:   3'- -AGC-CGCGCGACG-CGUGa----UUU-GUGGAc -5'
21190 5' -55.9 NC_004778.3 + 91091 0.67 0.81381
Target:  5'- --uGCGCGCUaGCGCGCgcGACgACCg- -3'
miRNA:   3'- agcCGCGCGA-CGCGUGauUUG-UGGac -5'
21190 5' -55.9 NC_004778.3 + 7838 0.67 0.81381
Target:  5'- aCcGCGCGCUGCagcagaacccGCGCcuuAACACCUa -3'
miRNA:   3'- aGcCGCGCGACG----------CGUGau-UUGUGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.