Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 90868 | 0.67 | 0.81381 |
Target: 5'- gUGGaCGCGUUGCGCggcauACUGucguACGCCa- -3' miRNA: 3'- aGCC-GCGCGACGCG-----UGAUu---UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 63025 | 0.67 | 0.822594 |
Target: 5'- -aGGUcgGCGCUGaCGCAUUAAaauguACACUUGc -3' miRNA: 3'- agCCG--CGCGAC-GCGUGAUU-----UGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 59470 | 0.66 | 0.855855 |
Target: 5'- gCGGCGgGCgcGCGCAUUcgGUACCUa -3' miRNA: 3'- aGCCGCgCGa-CGCGUGAuuUGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 65493 | 0.66 | 0.878622 |
Target: 5'- gUUGGUGCGCUucGCGUAUUcagucAGCACCc- -3' miRNA: 3'- -AGCCGCGCGA--CGCGUGAu----UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 97296 | 0.68 | 0.748034 |
Target: 5'- gUGGC-CGCgGCGCAUUgGAGCGCCg- -3' miRNA: 3'- aGCCGcGCGaCGCGUGA-UUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 5371 | 0.67 | 0.795737 |
Target: 5'- aUCaGCGCGCcGUGCAuCUgcacGAGCACUUGc -3' miRNA: 3'- -AGcCGCGCGaCGCGU-GA----UUUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 81460 | 0.67 | 0.822594 |
Target: 5'- --uGCGCGCgUGCGCGCguacuGGCGCgUGc -3' miRNA: 3'- agcCGCGCG-ACGCGUGau---UUGUGgAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 17844 | 0.66 | 0.885059 |
Target: 5'- cUCGGCGCGCguaacaccGCGCGCcguccgUGAcuuuggcGCGCCc- -3' miRNA: 3'- -AGCCGCGCGa-------CGCGUG------AUU-------UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 9511 | 0.67 | 0.802136 |
Target: 5'- gCGGCGgaauaucgaugcccUGCUcGCGCACUAgcuuauacGACACCa- -3' miRNA: 3'- aGCCGC--------------GCGA-CGCGUGAU--------UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 109482 | 0.66 | 0.885762 |
Target: 5'- -aGGUcgGCGCUGaCGCACgu--CACUUGu -3' miRNA: 3'- agCCG--CGCGAC-GCGUGauuuGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 64852 | 0.67 | 0.822594 |
Target: 5'- gUCGGCGCaCUGCGcCACacaugcuCACCg- -3' miRNA: 3'- -AGCCGCGcGACGC-GUGauuu---GUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 83857 | 0.67 | 0.81381 |
Target: 5'- -aGGCGCGCcagGCGCuggagGAGCGCUa- -3' miRNA: 3'- agCCGCGCGa--CGCGuga--UUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 122020 | 0.67 | 0.822594 |
Target: 5'- gUGGCGCcgacaagcaGCUGCGU-UUAAACGCCg- -3' miRNA: 3'- aGCCGCG---------CGACGCGuGAUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 53167 | 0.67 | 0.839616 |
Target: 5'- aCGGCGCGCgGCGUuuCUAccuuuAACAgCCUu -3' miRNA: 3'- aGCCGCGCGaCGCGu-GAU-----UUGU-GGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 11638 | 0.66 | 0.871253 |
Target: 5'- cUGGUGCGCcgcuUGCGCuugUUGGACACUa- -3' miRNA: 3'- aGCCGCGCG----ACGCGu--GAUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 115082 | 0.66 | 0.878622 |
Target: 5'- gUCGcGCGCGUUGCaGCGCauuucGAAcCGCCUc -3' miRNA: 3'- -AGC-CGCGCGACG-CGUGa----UUU-GUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 38887 | 0.69 | 0.707914 |
Target: 5'- cUCGGCggcgaGCGCUGC-CACUAuccGACGCUg- -3' miRNA: 3'- -AGCCG-----CGCGACGcGUGAU---UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 100693 | 0.68 | 0.747049 |
Target: 5'- cUCGGCgcuguuuGCGCgUGCGCGaUGAACGCgUGu -3' miRNA: 3'- -AGCCG-------CGCG-ACGCGUgAUUUGUGgAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 91343 | 0.68 | 0.77705 |
Target: 5'- gCGuGCGCGCUaGCGUGCUGuugcgcgucGCGCCg- -3' miRNA: 3'- aGC-CGCGCGA-CGCGUGAUu--------UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 92930 | 0.67 | 0.795737 |
Target: 5'- gCGGCGC-CUGCGUAUUGuuaACCg- -3' miRNA: 3'- aGCCGCGcGACGCGUGAUuugUGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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