Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 103902 | 0.66 | 0.885762 |
Target: 5'- cUGGCGCGCgaUGCGCGaUAAGCGgUa- -3' miRNA: 3'- aGCCGCGCG--ACGCGUgAUUUGUgGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 118948 | 0.68 | 0.77705 |
Target: 5'- uUCGGCGUug-GCGCACaccGACGCCa- -3' miRNA: 3'- -AGCCGCGcgaCGCGUGau-UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 99397 | 0.68 | 0.786465 |
Target: 5'- aCGGCGCGuUUGCGUucACUAcuGACgAUCUGu -3' miRNA: 3'- aGCCGCGC-GACGCG--UGAU--UUG-UGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 124892 | 0.67 | 0.814697 |
Target: 5'- aCaGCGCGCUGgGCGCcgugauagauuuaacGAACACCa- -3' miRNA: 3'- aGcCGCGCGACgCGUGa--------------UUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 23993 | 0.67 | 0.828637 |
Target: 5'- aUCGGC-CGCUGCGUgaccguuaagggucACUAu-CGCCUc -3' miRNA: 3'- -AGCCGcGCGACGCG--------------UGAUuuGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 2194 | 0.69 | 0.718068 |
Target: 5'- -gGGaGCGCUggauaGCGCGCUAGugGCCa- -3' miRNA: 3'- agCCgCGCGA-----CGCGUGAUUugUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 112341 | 0.68 | 0.7675 |
Target: 5'- -aGGCGCGCcGCGCGCacagcAACACg-- -3' miRNA: 3'- agCCGCGCGaCGCGUGau---UUGUGgac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 91590 | 0.66 | 0.871253 |
Target: 5'- gUCuGCGCG-UGCGCGucgaUAAGCACCa- -3' miRNA: 3'- -AGcCGCGCgACGCGUg---AUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 11017 | 0.67 | 0.81381 |
Target: 5'- -aGGCGCGCcGUGCAacccGCACCc- -3' miRNA: 3'- agCCGCGCGaCGCGUgauuUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 90868 | 0.67 | 0.81381 |
Target: 5'- gUGGaCGCGUUGCGCggcauACUGucguACGCCa- -3' miRNA: 3'- aGCC-GCGCGACGCG-----UGAUu---UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 733 | 0.66 | 0.878622 |
Target: 5'- --aGCGCaCUGUGCACgu--CACCUGc -3' miRNA: 3'- agcCGCGcGACGCGUGauuuGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 58379 | 0.66 | 0.878622 |
Target: 5'- -aGGC-CGCUGUGCagcgGCUGGACGCg-- -3' miRNA: 3'- agCCGcGCGACGCG----UGAUUUGUGgac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 74154 | 0.69 | 0.698718 |
Target: 5'- uUCGGC-CGCUGCGCGCgccagcgacucguACACUUc -3' miRNA: 3'- -AGCCGcGCGACGCGUGauu----------UGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 104562 | 0.69 | 0.718068 |
Target: 5'- uUCGG-GCGCUGCGCAUacguACuACUUGu -3' miRNA: 3'- -AGCCgCGCGACGCGUGauu-UG-UGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 92930 | 0.67 | 0.795737 |
Target: 5'- gCGGCGC-CUGCGUAUUGuuaACCg- -3' miRNA: 3'- aGCCGCGcGACGCGUGAUuugUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 82049 | 0.67 | 0.822594 |
Target: 5'- aCGcGCGCGCgUGCGaCACgucGCGCCc- -3' miRNA: 3'- aGC-CGCGCG-ACGC-GUGauuUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 64678 | 0.67 | 0.822594 |
Target: 5'- aUCGGCGCcgUGUGCACgguuuauGCACgUGa -3' miRNA: 3'- -AGCCGCGcgACGCGUGauu----UGUGgAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 115082 | 0.66 | 0.878622 |
Target: 5'- gUCGcGCGCGUUGCaGCGCauuucGAAcCGCCUc -3' miRNA: 3'- -AGC-CGCGCGACG-CGUGa----UUU-GUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 91091 | 0.67 | 0.81381 |
Target: 5'- --uGCGCGCUaGCGCGCgcGACgACCg- -3' miRNA: 3'- agcCGCGCGA-CGCGUGauUUG-UGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 7838 | 0.67 | 0.81381 |
Target: 5'- aCcGCGCGCUGCagcagaacccGCGCcuuAACACCUa -3' miRNA: 3'- aGcCGCGCGACG----------CGUGau-UUGUGGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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