miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21191 3' -48.2 NC_004778.3 + 92785 0.66 0.999098
Target:  5'- cGACUGCguGGaCGAGguGGUgcUGGGCa -3'
miRNA:   3'- aCUGGUGguCCaGCUUguUCA--AUUCG- -5'
21191 3' -48.2 NC_004778.3 + 111293 0.66 0.999098
Target:  5'- uUGGCCGCCGuGGU-GAGCGuuUUGauGGCa -3'
miRNA:   3'- -ACUGGUGGU-CCAgCUUGUucAAU--UCG- -5'
21191 3' -48.2 NC_004778.3 + 56743 0.66 0.999098
Target:  5'- aUGACCAUCAaaUCGAACAAcacgugaugcuuGUugUAGGCa -3'
miRNA:   3'- -ACUGGUGGUccAGCUUGUU------------CA--AUUCG- -5'
21191 3' -48.2 NC_004778.3 + 56421 0.66 0.998893
Target:  5'- aGGCUggGCgAGGacucgUUGAGCGAGUUAAGg -3'
miRNA:   3'- aCUGG--UGgUCC-----AGCUUGUUCAAUUCg -5'
21191 3' -48.2 NC_004778.3 + 102253 0.66 0.998893
Target:  5'- cUGaACCGCCGGG---GACAGGUUGuuguaguuGGCg -3'
miRNA:   3'- -AC-UGGUGGUCCagcUUGUUCAAU--------UCG- -5'
21191 3' -48.2 NC_004778.3 + 72278 0.66 0.998649
Target:  5'- ---aCGCuCAGGUCGAACAGcacguuuuuGUcGAGCa -3'
miRNA:   3'- acugGUG-GUCCAGCUUGUU---------CAaUUCG- -5'
21191 3' -48.2 NC_004778.3 + 79036 0.67 0.998022
Target:  5'- cGaACCGCCA--UUGAACAAGUgcuGCg -3'
miRNA:   3'- aC-UGGUGGUccAGCUUGUUCAauuCG- -5'
21191 3' -48.2 NC_004778.3 + 93688 0.67 0.997627
Target:  5'- uUGuCCGCCAGcUCGGGCGauuGGUacaAAGCg -3'
miRNA:   3'- -ACuGGUGGUCcAGCUUGU---UCAa--UUCG- -5'
21191 3' -48.2 NC_004778.3 + 95856 0.67 0.997627
Target:  5'- cGGCCuCCAcGGUCcagu-GGUUAAGCa -3'
miRNA:   3'- aCUGGuGGU-CCAGcuuguUCAAUUCG- -5'
21191 3' -48.2 NC_004778.3 + 29827 0.67 0.997627
Target:  5'- uUGACagguCguGGUCGAGCAccacaaauucguAGUcGAGCa -3'
miRNA:   3'- -ACUGgu--GguCCAGCUUGU------------UCAaUUCG- -5'
21191 3' -48.2 NC_004778.3 + 110997 0.67 0.997627
Target:  5'- cGGCCACguaGUCGAGCAAGUg---- -3'
miRNA:   3'- aCUGGUGgucCAGCUUGUUCAauucg -5'
21191 3' -48.2 NC_004778.3 + 94473 0.67 0.997119
Target:  5'- gUGGCCGCCA--UCGAAaucCGAGUUGcaacguuGGCa -3'
miRNA:   3'- -ACUGGUGGUccAGCUU---GUUCAAU-------UCG- -5'
21191 3' -48.2 NC_004778.3 + 64985 0.67 0.996639
Target:  5'- cGGCC-UCGGcGUCGAACGuguAGUUGucggGGCa -3'
miRNA:   3'- aCUGGuGGUC-CAGCUUGU---UCAAU----UCG- -5'
21191 3' -48.2 NC_004778.3 + 43440 0.67 0.996639
Target:  5'- cGACCACgAGcGUUGcGACAAGcgcguugAAGCg -3'
miRNA:   3'- aCUGGUGgUC-CAGC-UUGUUCaa-----UUCG- -5'
21191 3' -48.2 NC_004778.3 + 72495 0.67 0.996639
Target:  5'- -uGCCGCC--GUCGGugGcGUUGAGCg -3'
miRNA:   3'- acUGGUGGucCAGCUugUuCAAUUCG- -5'
21191 3' -48.2 NC_004778.3 + 95811 0.68 0.995258
Target:  5'- -uGCCGCCgugaaacuggcgcAGGUCGAgugGCAGGUUGuguuuGCc -3'
miRNA:   3'- acUGGUGG-------------UCCAGCU---UGUUCAAUu----CG- -5'
21191 3' -48.2 NC_004778.3 + 560 0.68 0.99454
Target:  5'- cGGCUACCGGGgCGGugucuGCGGGUcUGGGUu -3'
miRNA:   3'- aCUGGUGGUCCaGCU-----UGUUCA-AUUCG- -5'
21191 3' -48.2 NC_004778.3 + 40152 0.68 0.993641
Target:  5'- cGGCUACCAuGUCGuagucCAcGUUGGGCa -3'
miRNA:   3'- aCUGGUGGUcCAGCuu---GUuCAAUUCG- -5'
21191 3' -48.2 NC_004778.3 + 6085 0.68 0.992627
Target:  5'- -cACCGCCAGGUUGA---GGUUuuuGCu -3'
miRNA:   3'- acUGGUGGUCCAGCUuguUCAAuu-CG- -5'
21191 3' -48.2 NC_004778.3 + 120495 0.68 0.991489
Target:  5'- ---aCACCGGGU---GCAGGUUGAGUa -3'
miRNA:   3'- acugGUGGUCCAgcuUGUUCAAUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.