miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21191 3' -48.2 NC_004778.3 + 110060 0.75 0.841769
Target:  5'- gGugCGCCAGG-CGGAcCAGGUUuccGGGCa -3'
miRNA:   3'- aCugGUGGUCCaGCUU-GUUCAA---UUCG- -5'
21191 3' -48.2 NC_004778.3 + 111293 0.66 0.999098
Target:  5'- uUGGCCGCCGuGGU-GAGCGuuUUGauGGCa -3'
miRNA:   3'- -ACUGGUGGU-CCAgCUUGUucAAU--UCG- -5'
21191 3' -48.2 NC_004778.3 + 110997 0.67 0.997627
Target:  5'- cGGCCACguaGUCGAGCAAGUg---- -3'
miRNA:   3'- aCUGGUGgucCAGCUUGUUCAauucg -5'
21191 3' -48.2 NC_004778.3 + 29827 0.67 0.997627
Target:  5'- uUGACagguCguGGUCGAGCAccacaaauucguAGUcGAGCa -3'
miRNA:   3'- -ACUGgu--GguCCAGCUUGU------------UCAaUUCG- -5'
21191 3' -48.2 NC_004778.3 + 72495 0.67 0.996639
Target:  5'- -uGCCGCC--GUCGGugGcGUUGAGCg -3'
miRNA:   3'- acUGGUGGucCAGCUugUuCAAUUCG- -5'
21191 3' -48.2 NC_004778.3 + 43440 0.67 0.996639
Target:  5'- cGACCACgAGcGUUGcGACAAGcgcguugAAGCg -3'
miRNA:   3'- aCUGGUGgUC-CAGC-UUGUUCaa-----UUCG- -5'
21191 3' -48.2 NC_004778.3 + 40152 0.68 0.993641
Target:  5'- cGGCUACCAuGUCGuagucCAcGUUGGGCa -3'
miRNA:   3'- aCUGGUGGUcCAGCuu---GUuCAAUUCG- -5'
21191 3' -48.2 NC_004778.3 + 6085 0.68 0.992627
Target:  5'- -cACCGCCAGGUUGA---GGUUuuuGCu -3'
miRNA:   3'- acUGGUGGUCCAGCUuguUCAAuu-CG- -5'
21191 3' -48.2 NC_004778.3 + 39178 0.69 0.99008
Target:  5'- cGACCACCGcgucgcccgcuacGGUCauGCAGGcgcUAAGCg -3'
miRNA:   3'- aCUGGUGGU-------------CCAGcuUGUUCa--AUUCG- -5'
21191 3' -48.2 NC_004778.3 + 111690 0.69 0.987225
Target:  5'- cGGCUAgCAGGcCGAGCu-GUUGcAGCg -3'
miRNA:   3'- aCUGGUgGUCCaGCUUGuuCAAU-UCG- -5'
21191 3' -48.2 NC_004778.3 + 31197 0.73 0.903463
Target:  5'- uUGACCGCCGacauucaCGGACAGGUgGAGCa -3'
miRNA:   3'- -ACUGGUGGUcca----GCUUGUUCAaUUCG- -5'
21191 3' -48.2 NC_004778.3 + 125899 0.71 0.95656
Target:  5'- -cGCCuuACCAGGUgacauucCGAACAaugaAGUUGAGCu -3'
miRNA:   3'- acUGG--UGGUCCA-------GCUUGU----UCAAUUCG- -5'
21191 3' -48.2 NC_004778.3 + 49052 0.71 0.967893
Target:  5'- -cGCaCAgCGGGUCGccCGGGUUAGGCa -3'
miRNA:   3'- acUG-GUgGUCCAGCuuGUUCAAUUCG- -5'
21191 3' -48.2 NC_004778.3 + 75146 0.7 0.971052
Target:  5'- uUGGCCGCCGGGgCGGGCucacu-GGCc -3'
miRNA:   3'- -ACUGGUGGUCCaGCUUGuucaauUCG- -5'
21191 3' -48.2 NC_004778.3 + 87228 0.7 0.979186
Target:  5'- uUGcCCGCCAGcucauuaCGGACAAGUgcAGCg -3'
miRNA:   3'- -ACuGGUGGUCca-----GCUUGUUCAauUCG- -5'
21191 3' -48.2 NC_004778.3 + 112381 0.69 0.985488
Target:  5'- uUGACCGCaagcgcgcGGUCGcGCAGcUUAGGCg -3'
miRNA:   3'- -ACUGGUGgu------CCAGCuUGUUcAAUUCG- -5'
21191 3' -48.2 NC_004778.3 + 117092 1.14 0.006532
Target:  5'- gUGACCACCAGGUCGAACAAGUUAAGCa -3'
miRNA:   3'- -ACUGGUGGUCCAGCUUGUUCAAUUCG- -5'
21191 3' -48.2 NC_004778.3 + 56743 0.66 0.999098
Target:  5'- aUGACCAUCAaaUCGAACAAcacgugaugcuuGUugUAGGCa -3'
miRNA:   3'- -ACUGGUGGUccAGCUUGUU------------CA--AUUCG- -5'
21191 3' -48.2 NC_004778.3 + 102253 0.66 0.998893
Target:  5'- cUGaACCGCCGGG---GACAGGUUGuuguaguuGGCg -3'
miRNA:   3'- -AC-UGGUGGUCCagcUUGUUCAAU--------UCG- -5'
21191 3' -48.2 NC_004778.3 + 56421 0.66 0.998893
Target:  5'- aGGCUggGCgAGGacucgUUGAGCGAGUUAAGg -3'
miRNA:   3'- aCUGG--UGgUCC-----AGCUUGUUCAAUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.