Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21191 | 3' | -48.2 | NC_004778.3 | + | 29133 | 0.69 | 0.985488 |
Target: 5'- cGGCCGC--GGUUGGACAGGcguGGCg -3' miRNA: 3'- aCUGGUGguCCAGCUUGUUCaauUCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 11068 | 0.75 | 0.824029 |
Target: 5'- cUGGCCGaauCCAGGUCGAACucGU--GGCc -3' miRNA: 3'- -ACUGGU---GGUCCAGCUUGuuCAauUCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 46872 | 0.78 | 0.693097 |
Target: 5'- -uACCACCAcGUCGAGCGAGUUcaAGGUg -3' miRNA: 3'- acUGGUGGUcCAGCUUGUUCAA--UUCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 94473 | 0.67 | 0.997119 |
Target: 5'- gUGGCCGCCA--UCGAAaucCGAGUUGcaacguuGGCa -3' miRNA: 3'- -ACUGGUGGUccAGCUU---GUUCAAU-------UCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 93688 | 0.67 | 0.997627 |
Target: 5'- uUGuCCGCCAGcUCGGGCGauuGGUacaAAGCg -3' miRNA: 3'- -ACuGGUGGUCcAGCUUGU---UCAa--UUCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 95856 | 0.67 | 0.997627 |
Target: 5'- cGGCCuCCAcGGUCcagu-GGUUAAGCa -3' miRNA: 3'- aCUGGuGGU-CCAGcuuguUCAAUUCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 79036 | 0.67 | 0.998022 |
Target: 5'- cGaACCGCCA--UUGAACAAGUgcuGCg -3' miRNA: 3'- aC-UGGUGGUccAGCUUGUUCAauuCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 72278 | 0.66 | 0.998649 |
Target: 5'- ---aCGCuCAGGUCGAACAGcacguuuuuGUcGAGCa -3' miRNA: 3'- acugGUG-GUCCAGCUUGUU---------CAaUUCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 56421 | 0.66 | 0.998893 |
Target: 5'- aGGCUggGCgAGGacucgUUGAGCGAGUUAAGg -3' miRNA: 3'- aCUGG--UGgUCC-----AGCUUGUUCAAUUCg -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 102253 | 0.66 | 0.998893 |
Target: 5'- cUGaACCGCCGGG---GACAGGUUGuuguaguuGGCg -3' miRNA: 3'- -AC-UGGUGGUCCagcUUGUUCAAU--------UCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 56743 | 0.66 | 0.999098 |
Target: 5'- aUGACCAUCAaaUCGAACAAcacgugaugcuuGUugUAGGCa -3' miRNA: 3'- -ACUGGUGGUccAGCUUGUU------------CA--AUUCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 92785 | 0.66 | 0.999098 |
Target: 5'- cGACUGCguGGaCGAGguGGUgcUGGGCa -3' miRNA: 3'- aCUGGUGguCCaGCUUguUCA--AUUCG- -5' |
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21191 | 3' | -48.2 | NC_004778.3 | + | 117092 | 1.14 | 0.006532 |
Target: 5'- gUGACCACCAGGUCGAACAAGUUAAGCa -3' miRNA: 3'- -ACUGGUGGUCCAGCUUGUUCAAUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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