miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 5' -56 NC_004778.3 + 23936 0.85 0.090881
Target:  5'- gUACUCGAAAcGCGAGG-CGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCaGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 23979 0.66 0.882223
Target:  5'- -gUCCGAGgcGCGGGaUCGGcCGCUGc -3'
miRNA:   3'- auGGGCUUuuCGCUCcAGCC-GCGACu -5'
21195 5' -56 NC_004778.3 + 24001 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24067 0.93 0.028628
Target:  5'- gUACUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCuCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24133 0.94 0.022898
Target:  5'- gUACUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24199 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24265 0.86 0.081568
Target:  5'- gUACUCGaAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGC-UUUUCGCuCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24332 0.94 0.022898
Target:  5'- gUACUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24398 0.76 0.347284
Target:  5'- gUACCaGAAAAGCacGGUCGGCGUUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGcuCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 29819 0.67 0.833014
Target:  5'- gUACCCGAAAAGCGAGuGUuauuuuuagacgugCGucaGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUC-CA--------------GC---CGCGaCU- -5'
21195 5' -56 NC_004778.3 + 48919 0.73 0.460007
Target:  5'- gACUCGAAca-CGAGGUCGGCGCa-- -3'
miRNA:   3'- aUGGGCUUuucGCUCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 60948 0.7 0.672424
Target:  5'- aACUCuu-GAGCGuGGUCGGCGCa-- -3'
miRNA:   3'- aUGGGcuuUUCGCuCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 62612 0.75 0.396807
Target:  5'- gUACauaCGuucuuaAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- -AUGg--GC------UUUUCGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 62685 0.85 0.09852
Target:  5'- -uCUCGAAAAGUGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 62751 0.88 0.058799
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 62817 0.96 0.016827
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 62880 1.07 0.003105
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 63011 1.01 0.007238
Target:  5'- gUACUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 66656 0.74 0.43134
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU-----------CC-------AGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 66722 0.74 0.43134
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU-----------CC-------AGCCGCGaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.