miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 5' -56 NC_004778.3 + 4505 0.88 0.057207
Target:  5'- gUACUC-AAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGcUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 4566 0.79 0.220619
Target:  5'- gUGuuCGGAAAGCGGGGUCGGCGaUGAc -3'
miRNA:   3'- -AUggGCUUUUCGCUCCAGCCGCgACU- -5'
21195 5' -56 NC_004778.3 + 4627 0.85 0.101198
Target:  5'- gUACUU-AAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGcUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 6771 1.07 0.003105
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 6815 0.88 0.057207
Target:  5'- cGCUuuucgaGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aUGGg-----CUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 6881 1.07 0.003105
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 6945 0.93 0.02633
Target:  5'- -uCCCGAAAAGCGAGGUCGGCGCUu- -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGAcu -5'
21195 5' -56 NC_004778.3 + 7029 1.07 0.003105
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 7127 1.07 0.003105
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 7193 0.91 0.039964
Target:  5'- gUACUCGAAAAGCGAGGUCGGCGCc-- -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 7252 0.87 0.07317
Target:  5'- gUACUCGAAAAGCaAGGUCGGCGCUGc -3'
miRNA:   3'- -AUGGGCUUUUCGcUCCAGCCGCGACu -5'
21195 5' -56 NC_004778.3 + 7289 0.88 0.063836
Target:  5'- gUACuuGAAAAGCaAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGggCUUUUCGcUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 7354 0.74 0.414294
Target:  5'- cACuuGAAAAGCGGGGUCaaUGCUGAu -3'
miRNA:   3'- aUGggCUUUUCGCUCCAGccGCGACU- -5'
21195 5' -56 NC_004778.3 + 12433 0.7 0.641291
Target:  5'- gUGCCgGu--GGCGGGGUCGGUGUa-- -3'
miRNA:   3'- -AUGGgCuuuUCGCUCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 19847 0.74 0.435893
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuaaacGugcGUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU---------------C---CAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 20002 0.74 0.43134
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU-----------CC-------AGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 21039 0.69 0.733519
Target:  5'- cGCCgCGGcaAAAGCGuGGUCGGCGg--- -3'
miRNA:   3'- aUGG-GCU--UUUCGCuCCAGCCGCgacu -5'
21195 5' -56 NC_004778.3 + 21680 0.69 0.733519
Target:  5'- cGCCCGAcGAGCGcGacgCGGUGCUGc -3'
miRNA:   3'- aUGGGCUuUUCGCuCca-GCCGCGACu -5'
21195 5' -56 NC_004778.3 + 23804 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 23870 0.93 0.028628
Target:  5'- gUACUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCuCCAGCCGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.