miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 5' -56 NC_004778.3 + 125064 0.67 0.827051
Target:  5'- cUGCCCGAcGAuGCu-GGUCGGCGUg-- -3'
miRNA:   3'- -AUGGGCUuUU-CGcuCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 122973 0.93 0.025605
Target:  5'- gUACCCGAAAAGCGGGGUUGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 122890 0.85 0.09852
Target:  5'- gUACuuGGAAAGCGGGGUCGGCGCc-- -3'
miRNA:   3'- -AUGggCUUUUCGCUCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 122828 0.8 0.209861
Target:  5'- gUACuuGGAAAGCGGGaUCGGCGUUGAc -3'
miRNA:   3'- -AUGggCUUUUCGCUCcAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 122772 0.85 0.095909
Target:  5'- gUACUCGAAAAGUGGaGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUcCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 116699 0.67 0.835541
Target:  5'- cGCCCGAc-AGCGGaaUCGGCGCg-- -3'
miRNA:   3'- aUGGGCUuuUCGCUccAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 109755 1.03 0.006112
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACu -5'
21195 5' -56 NC_004778.3 + 109689 1.07 0.003105
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 109626 0.96 0.016827
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 109551 0.67 0.799602
Target:  5'- cGCaCGuAAGAuagcacuGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- aUGgGC-UUUU-------CGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 109526 0.88 0.058799
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 109468 1.07 0.003105
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 109404 0.93 0.025605
Target:  5'- -uCCCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 99654 0.73 0.460007
Target:  5'- -uCUCaAAAAGCaGGGUCGGCGCUGGc -3'
miRNA:   3'- auGGGcUUUUCGcUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 99588 0.75 0.379801
Target:  5'- -uCUCaAAAAGCaGGGUCGGCGCUGAc -3'
miRNA:   3'- auGGGcUUUUCGcUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 99481 0.91 0.037808
Target:  5'- gUACUCGAAAAGCaGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGcUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 99415 0.92 0.030269
Target:  5'- gUACUCGGAAAGCGAGGUCGGCGCUc- -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGAcu -5'
21195 5' -56 NC_004778.3 + 99357 0.99 0.011042
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 99242 0.76 0.316807
Target:  5'- cGCUCGuauuuguAAAGCGAGGUCG-CGCUGAc -3'
miRNA:   3'- aUGGGCu------UUUCGCUCCAGCcGCGACU- -5'
21195 5' -56 NC_004778.3 + 85754 0.7 0.662069
Target:  5'- aGCCCGAucacGAGCGGGaacgaaagcGUCGGCGUgaaGAa -3'
miRNA:   3'- aUGGGCUu---UUCGCUC---------CAGCCGCGa--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.