miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 5' -56 NC_004778.3 + 20002 0.74 0.43134
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU-----------CC-------AGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 23936 0.85 0.090881
Target:  5'- gUACUCGAAAcGCGAGG-CGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCaGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 122772 0.85 0.095909
Target:  5'- gUACUCGAAAAGUGGaGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUcCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 122890 0.85 0.09852
Target:  5'- gUACuuGGAAAGCGGGGUCGGCGCc-- -3'
miRNA:   3'- -AUGggCUUUUCGCUCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 66851 0.83 0.131659
Target:  5'- gUACCCGAAAAGCGAGGcuaucuuuaggcgUCGGCGCc-- -3'
miRNA:   3'- -AUGGGCUUUUCGCUCC-------------AGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 122828 0.8 0.209861
Target:  5'- gUACuuGGAAAGCGGGaUCGGCGUUGAc -3'
miRNA:   3'- -AUGggCUUUUCGCUCcAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 99242 0.76 0.316807
Target:  5'- cGCUCGuauuuguAAAGCGAGGUCG-CGCUGAc -3'
miRNA:   3'- aUGGGCu------UUUCGCUCCAGCcGCGACU- -5'
21195 5' -56 NC_004778.3 + 24398 0.76 0.347284
Target:  5'- gUACCaGAAAAGCacGGUCGGCGUUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGcuCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 99588 0.75 0.379801
Target:  5'- -uCUCaAAAAGCaGGGUCGGCGCUGAc -3'
miRNA:   3'- auGGGcUUUUCGcUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24265 0.86 0.081568
Target:  5'- gUACUCGaAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGC-UUUUCGCuCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 99481 0.91 0.037808
Target:  5'- gUACUCGAAAAGCaGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGcUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 99415 0.92 0.030269
Target:  5'- gUACUCGGAAAGCGAGGUCGGCGCUc- -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGAcu -5'
21195 5' -56 NC_004778.3 + 23804 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24001 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24199 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24133 0.94 0.022898
Target:  5'- gUACUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24332 0.94 0.022898
Target:  5'- gUACUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 122973 0.93 0.025605
Target:  5'- gUACCCGAAAAGCGGGGUUGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 23870 0.93 0.028628
Target:  5'- gUACUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCuCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 24067 0.93 0.028628
Target:  5'- gUACUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCuCCAGCCGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.