Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21195 | 5' | -56 | NC_004778.3 | + | 23979 | 0.66 | 0.882223 |
Target: 5'- -gUCCGAGgcGCGGGaUCGGcCGCUGc -3' miRNA: 3'- auGGGCUUuuCGCUCcAGCC-GCGACu -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 62751 | 0.88 | 0.058799 |
Target: 5'- -uCUCGAAAAGCGAGGUCGGCGCcGAc -3' miRNA: 3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 4505 | 0.88 | 0.057207 |
Target: 5'- gUACUC-AAAAGCGGGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGcUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 6771 | 1.07 | 0.003105 |
Target: 5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 109551 | 0.67 | 0.799602 |
Target: 5'- cGCaCGuAAGAuagcacuGCGAGGUCGGCGCcGAc -3' miRNA: 3'- aUGgGC-UUUU-------CGCUCCAGCCGCGaCU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 21680 | 0.69 | 0.733519 |
Target: 5'- cGCCCGAcGAGCGcGacgCGGUGCUGc -3' miRNA: 3'- aUGGGCUuUUCGCuCca-GCCGCGACu -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 77118 | 0.69 | 0.723508 |
Target: 5'- aGCUCGuuuGGCGAaaaGGcagCGGCGCUGGa -3' miRNA: 3'- aUGGGCuuuUCGCU---CCa--GCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 12433 | 0.7 | 0.641291 |
Target: 5'- gUGCCgGu--GGCGGGGUCGGUGUa-- -3' miRNA: 3'- -AUGGgCuuuUCGCUCCAGCCGCGacu -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 4566 | 0.79 | 0.220619 |
Target: 5'- gUGuuCGGAAAGCGGGGUCGGCGaUGAc -3' miRNA: 3'- -AUggGCUUUUCGCUCCAGCCGCgACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 109526 | 0.88 | 0.058799 |
Target: 5'- -uCUCGAAAAGCGAGGUCGGCGCcGAc -3' miRNA: 3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 62685 | 0.85 | 0.09852 |
Target: 5'- -uCUCGAAAAGUGAGGUCGGCGCcGAc -3' miRNA: 3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 62612 | 0.75 | 0.396807 |
Target: 5'- gUACauaCGuucuuaAAAAGCGAGGUCGGCGCcGAc -3' miRNA: 3'- -AUGg--GC------UUUUCGCUCCAGCCGCGaCU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 116699 | 0.67 | 0.835541 |
Target: 5'- cGCCCGAc-AGCGGaaUCGGCGCg-- -3' miRNA: 3'- aUGGGCUuuUCGCUccAGCCGCGacu -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 7289 | 0.88 | 0.063836 |
Target: 5'- gUACuuGAAAAGCaAGGUCGGCGCUGAc -3' miRNA: 3'- -AUGggCUUUUCGcUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 29819 | 0.67 | 0.833014 |
Target: 5'- gUACCCGAAAAGCGAGuGUuauuuuuagacgugCGucaGCGCcGAc -3' miRNA: 3'- -AUGGGCUUUUCGCUC-CA--------------GC---CGCGaCU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 7354 | 0.74 | 0.414294 |
Target: 5'- cACuuGAAAAGCGGGGUCaaUGCUGAu -3' miRNA: 3'- aUGggCUUUUCGCUCCAGccGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 7252 | 0.87 | 0.07317 |
Target: 5'- gUACUCGAAAAGCaAGGUCGGCGCUGc -3' miRNA: 3'- -AUGGGCUUUUCGcUCCAGCCGCGACu -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 6815 | 0.88 | 0.057207 |
Target: 5'- cGCUuuucgaGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- aUGGg-----CUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 125064 | 0.67 | 0.827051 |
Target: 5'- cUGCCCGAcGAuGCu-GGUCGGCGUg-- -3' miRNA: 3'- -AUGGGCUuUU-CGcuCCAGCCGCGacu -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 21039 | 0.69 | 0.733519 |
Target: 5'- cGCCgCGGcaAAAGCGuGGUCGGCGg--- -3' miRNA: 3'- aUGG-GCU--UUUCGCuCCAGCCGCgacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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