Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 48674 | 0.7 | 0.563415 |
Target: 5'- -uGGUCGCGGUGCUgCUGGUGCCuGCGg -3' miRNA: 3'- uuUUAGUGCCGCGAgGGCUGCGG-CGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 49017 | 0.71 | 0.503665 |
Target: 5'- ----gCGCGGUGCggCUGGCGCCGUAc -3' miRNA: 3'- uuuuaGUGCCGCGagGGCUGCGGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 49307 | 0.71 | 0.503665 |
Target: 5'- ----gCGCGGCGCggucauuggaCgCGGCGCCGCAc -3' miRNA: 3'- uuuuaGUGCCGCGa---------GgGCUGCGGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 52925 | 0.66 | 0.765808 |
Target: 5'- --cGUCGcCGGCGCUCugCCGuuucaGCCGCc -3' miRNA: 3'- uuuUAGU-GCCGCGAG--GGCug---CGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 59227 | 0.67 | 0.736726 |
Target: 5'- --uGUC-CGGCGCU-UgGGCGCCGUAg -3' miRNA: 3'- uuuUAGuGCCGCGAgGgCUGCGGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 60074 | 0.69 | 0.583784 |
Target: 5'- cGAGUCGCGGUuguuugcgccaaGCUCCuCGuCGCUGCu -3' miRNA: 3'- uUUUAGUGCCG------------CGAGG-GCuGCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 61068 | 0.66 | 0.756222 |
Target: 5'- cGAAUCGCGGCGCcgaCUGAaUGCgCGCu -3' miRNA: 3'- uUUUAGUGCCGCGag-GGCU-GCG-GCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 64145 | 0.71 | 0.465391 |
Target: 5'- -cGGUCACucaGCGCgucgcgCCCGugGCCGCc -3' miRNA: 3'- uuUUAGUGc--CGCGa-----GGGCugCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 67414 | 0.69 | 0.635196 |
Target: 5'- ---uUgGCGcCGCUCUCGGCGuCCGCAg -3' miRNA: 3'- uuuuAgUGCcGCGAGGGCUGC-GGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 68060 | 0.67 | 0.696703 |
Target: 5'- ---cUCAaacUGGCGCUCagcgacgacgcgCCGGCGCCGUc -3' miRNA: 3'- uuuuAGU---GCCGCGAG------------GGCUGCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 80708 | 0.7 | 0.563415 |
Target: 5'- aAGAGUCguGCGuGCGaaCCCGuCGCCGCGg -3' miRNA: 3'- -UUUUAG--UGC-CGCgaGGGCuGCGGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 81499 | 0.71 | 0.493963 |
Target: 5'- -----aGCGGCGCUgCCCuuaGCGCCGCu -3' miRNA: 3'- uuuuagUGCCGCGA-GGGc--UGCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 85119 | 0.66 | 0.756222 |
Target: 5'- ---cUCGCGGCGCcgCUCGuCGCUgGCGg -3' miRNA: 3'- uuuuAGUGCCGCGa-GGGCuGCGG-CGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 85271 | 0.66 | 0.756222 |
Target: 5'- ----aCACGGCGCccgcguccaUgCCGuCGCCGCc -3' miRNA: 3'- uuuuaGUGCCGCG---------AgGGCuGCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 85692 | 0.66 | 0.781822 |
Target: 5'- -cGAUCGCGcGCgGUggacacaugaugugUCCCGGCGCgGCGc -3' miRNA: 3'- uuUUAGUGC-CG-CG--------------AGGGCUGCGgCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 86303 | 0.73 | 0.376977 |
Target: 5'- aAAAcgUGCGGCGCgCCgCGGCGCCGUc -3' miRNA: 3'- -UUUuaGUGCCGCGaGG-GCUGCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 90704 | 0.67 | 0.696703 |
Target: 5'- uGGAUgCGCGGCgGCUCCaaccUGCCGCAa -3' miRNA: 3'- uUUUA-GUGCCG-CGAGGgcu-GCGGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 91812 | 0.67 | 0.736726 |
Target: 5'- -cGGUCACGGCGC-CgCCGAuuuuuuuacCGCUGUg -3' miRNA: 3'- uuUUAGUGCCGCGaG-GGCU---------GCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 94981 | 0.67 | 0.716861 |
Target: 5'- ----cCGCGguGCGCUCCuCGACG-CGCAg -3' miRNA: 3'- uuuuaGUGC--CGCGAGG-GCUGCgGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 95254 | 0.67 | 0.696703 |
Target: 5'- ----gCAUGGUGCgCCgCGGCGaCCGCAc -3' miRNA: 3'- uuuuaGUGCCGCGaGG-GCUGC-GGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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