miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 5' -57.8 NC_004778.3 + 1920 0.68 0.645503
Target:  5'- ----cCGcCGGCGCUUugUCGACGCCGUc -3'
miRNA:   3'- uuuuaGU-GCCGCGAG--GGCUGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 4551 0.67 0.696703
Target:  5'- --uAUCACGGCGC-CCagcGCGCUGUg -3'
miRNA:   3'- uuuUAGUGCCGCGaGGgc-UGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 7726 0.66 0.801056
Target:  5'- ----cUACGGCGCgccgacaacgugCCCGACGCgggccUGCAc -3'
miRNA:   3'- uuuuaGUGCCGCGa-----------GGGCUGCG-----GCGU- -5'
21196 5' -57.8 NC_004778.3 + 7828 0.66 0.802853
Target:  5'- -----gACGGCGUggaCCGcGCGCUGCAg -3'
miRNA:   3'- uuuuagUGCCGCGag-GGC-UGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 9448 0.66 0.775273
Target:  5'- ----aCACGGcCGUcgUCUCGGCGgCGCAg -3'
miRNA:   3'- uuuuaGUGCC-GCG--AGGGCUGCgGCGU- -5'
21196 5' -57.8 NC_004778.3 + 15546 0.67 0.726836
Target:  5'- ----cCGCGGCGCcgccuucgCCCGACG-CGCc -3'
miRNA:   3'- uuuuaGUGCCGCGa-------GGGCUGCgGCGu -5'
21196 5' -57.8 NC_004778.3 + 21013 0.66 0.775273
Target:  5'- ----cCGCGGCGCaccagcgcgUCCaccuGCGCCGCGg -3'
miRNA:   3'- uuuuaGUGCCGCG---------AGGgc--UGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 25784 0.66 0.784608
Target:  5'- gGAGAaCACGGUGCUacaCCgCGACGgCGUg -3'
miRNA:   3'- -UUUUaGUGCCGCGA---GG-GCUGCgGCGu -5'
21196 5' -57.8 NC_004778.3 + 32143 0.75 0.280141
Target:  5'- -----gACGGCGCUCCaauGCGCCGCGg -3'
miRNA:   3'- uuuuagUGCCGCGAGGgc-UGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 32865 0.67 0.716861
Target:  5'- ----gCAgGGUGCUCCaCGAC-CCGCu -3'
miRNA:   3'- uuuuaGUgCCGCGAGG-GCUGcGGCGu -5'
21196 5' -57.8 NC_004778.3 + 32908 0.67 0.746525
Target:  5'- -uGGUCACuuggcaGGCGCUCCCauuuuCGcCCGCGu -3'
miRNA:   3'- uuUUAGUG------CCGCGAGGGcu---GC-GGCGU- -5'
21196 5' -57.8 NC_004778.3 + 33643 0.67 0.713855
Target:  5'- ---uUCACGGCGgcaaUCUCGACgagcccuuugacgaGCCGCGa -3'
miRNA:   3'- uuuuAGUGCCGCg---AGGGCUG--------------CGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 33683 0.67 0.736726
Target:  5'- ----gCGCGGauaGCgCCCGGCGCgGCu -3'
miRNA:   3'- uuuuaGUGCCg--CGaGGGCUGCGgCGu -5'
21196 5' -57.8 NC_004778.3 + 34196 0.67 0.736726
Target:  5'- ----cCGCGGCGCaccaugCCCGAgucCGCgGCGa -3'
miRNA:   3'- uuuuaGUGCCGCGa-----GGGCU---GCGgCGU- -5'
21196 5' -57.8 NC_004778.3 + 35806 0.7 0.543241
Target:  5'- --uGUUuCGGCuGCccgaCCCGGCGCCGCAc -3'
miRNA:   3'- uuuUAGuGCCG-CGa---GGGCUGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 36206 0.71 0.474822
Target:  5'- cAGAUCGCGGCGa---UGGCGCCGCu -3'
miRNA:   3'- uUUUAGUGCCGCgaggGCUGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 38893 0.68 0.665049
Target:  5'- -----gGCGaGCGCUgccacuaUCCGACGCUGCAg -3'
miRNA:   3'- uuuuagUGC-CGCGA-------GGGCUGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 40510 0.69 0.604294
Target:  5'- ---cUUGCGGCGCU-UCGACGCCGg- -3'
miRNA:   3'- uuuuAGUGCCGCGAgGGCUGCGGCgu -5'
21196 5' -57.8 NC_004778.3 + 43132 0.67 0.716861
Target:  5'- ---uUCgACGGCGC-CgCGgcGCGCCGCAc -3'
miRNA:   3'- uuuuAG-UGCCGCGaGgGC--UGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 43846 0.66 0.793805
Target:  5'- ----gCGCGGC-CgUCCGACGCgGCAa -3'
miRNA:   3'- uuuuaGUGCCGcGaGGGCUGCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.