Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 108292 | 1.06 | 0.002302 |
Target: 5'- cAAAAUCACGGCGCUCCCGACGCCGCAg -3' miRNA: 3'- -UUUUAGUGCCGCGAGGGCUGCGGCGU- -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 32143 | 0.75 | 0.280141 |
Target: 5'- -----gACGGCGCUCCaauGCGCCGCGg -3' miRNA: 3'- uuuuagUGCCGCGAGGgc-UGCGGCGU- -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 86303 | 0.73 | 0.376977 |
Target: 5'- aAAAcgUGCGGCGCgCCgCGGCGCCGUc -3' miRNA: 3'- -UUUuaGUGCCGCGaGG-GCUGCGGCGu -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 64145 | 0.71 | 0.465391 |
Target: 5'- -cGGUCACucaGCGCgucgcgCCCGugGCCGCc -3' miRNA: 3'- uuUUAGUGc--CGCGa-----GGGCugCGGCGu -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 36206 | 0.71 | 0.474822 |
Target: 5'- cAGAUCGCGGCGa---UGGCGCCGCu -3' miRNA: 3'- uUUUAGUGCCGCgaggGCUGCGGCGu -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 81499 | 0.71 | 0.493963 |
Target: 5'- -----aGCGGCGCUgCCCuuaGCGCCGCu -3' miRNA: 3'- uuuuagUGCCGCGA-GGGc--UGCGGCGu -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 49307 | 0.71 | 0.503665 |
Target: 5'- ----gCGCGGCGCggucauuggaCgCGGCGCCGCAc -3' miRNA: 3'- uuuuaGUGCCGCGa---------GgGCUGCGGCGU- -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 49017 | 0.71 | 0.503665 |
Target: 5'- ----gCGCGGUGCggCUGGCGCCGUAc -3' miRNA: 3'- uuuuaGUGCCGCGagGGCUGCGGCGU- -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 35806 | 0.7 | 0.543241 |
Target: 5'- --uGUUuCGGCuGCccgaCCCGGCGCCGCAc -3' miRNA: 3'- uuuUAGuGCCG-CGa---GGGCUGCGGCGU- -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 80708 | 0.7 | 0.563415 |
Target: 5'- aAGAGUCguGCGuGCGaaCCCGuCGCCGCGg -3' miRNA: 3'- -UUUUAG--UGC-CGCgaGGGCuGCGGCGU- -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 48674 | 0.7 | 0.563415 |
Target: 5'- -uGGUCGCGGUGCUgCUGGUGCCuGCGg -3' miRNA: 3'- uuUUAGUGCCGCGAgGGCUGCGG-CGU- -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 60074 | 0.69 | 0.583784 |
Target: 5'- cGAGUCGCGGUuguuugcgccaaGCUCCuCGuCGCUGCu -3' miRNA: 3'- uUUUAGUGCCG------------CGAGG-GCuGCGGCGu -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 118783 | 0.69 | 0.604294 |
Target: 5'- ----gCGCGGCGCggCCGGCG-CGCAc -3' miRNA: 3'- uuuuaGUGCCGCGagGGCUGCgGCGU- -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 40510 | 0.69 | 0.604294 |
Target: 5'- ---cUUGCGGCGCU-UCGACGCCGg- -3' miRNA: 3'- uuuuAGUGCCGCGAgGGCUGCGGCgu -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 124075 | 0.69 | 0.624887 |
Target: 5'- cAGAUgCACGGCGCg-CUGAUGCgCGCGg -3' miRNA: 3'- uUUUA-GUGCCGCGagGGCUGCG-GCGU- -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 120968 | 0.69 | 0.624887 |
Target: 5'- ----gCGCGGgccgcgccCGCUgcCCCGGCGCCGCc -3' miRNA: 3'- uuuuaGUGCC--------GCGA--GGGCUGCGGCGu -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 67414 | 0.69 | 0.635196 |
Target: 5'- ---uUgGCGcCGCUCUCGGCGuCCGCAg -3' miRNA: 3'- uuuuAgUGCcGCGAGGGCUGC-GGCGU- -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 1920 | 0.68 | 0.645503 |
Target: 5'- ----cCGcCGGCGCUUugUCGACGCCGUc -3' miRNA: 3'- uuuuaGU-GCCGCGAG--GGCUGCGGCGu -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 96074 | 0.68 | 0.645503 |
Target: 5'- -----gACGGCGCgucgUCCgCGACGUCGCc -3' miRNA: 3'- uuuuagUGCCGCG----AGG-GCUGCGGCGu -5' |
|||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 38893 | 0.68 | 0.665049 |
Target: 5'- -----gGCGaGCGCUgccacuaUCCGACGCUGCAg -3' miRNA: 3'- uuuuagUGC-CGCGA-------GGGCUGCGGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home