Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21196 | 5' | -57.8 | NC_004778.3 | + | 32143 | 0.75 | 0.280141 |
Target: 5'- -----gACGGCGCUCCaauGCGCCGCGg -3' miRNA: 3'- uuuuagUGCCGCGAGGgc-UGCGGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 95254 | 0.67 | 0.696703 |
Target: 5'- ----gCAUGGUGCgCCgCGGCGaCCGCAc -3' miRNA: 3'- uuuuaGUGCCGCGaGG-GCUGC-GGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 33643 | 0.67 | 0.713855 |
Target: 5'- ---uUCACGGCGgcaaUCUCGACgagcccuuugacgaGCCGCGa -3' miRNA: 3'- uuuuAGUGCCGCg---AGGGCUG--------------CGGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 43132 | 0.67 | 0.716861 |
Target: 5'- ---uUCgACGGCGC-CgCGgcGCGCCGCAc -3' miRNA: 3'- uuuuAG-UGCCGCGaGgGC--UGCGGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 85271 | 0.66 | 0.756222 |
Target: 5'- ----aCACGGCGCccgcguccaUgCCGuCGCCGCc -3' miRNA: 3'- uuuuaGUGCCGCG---------AgGGCuGCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 61068 | 0.66 | 0.756222 |
Target: 5'- cGAAUCGCGGCGCcgaCUGAaUGCgCGCu -3' miRNA: 3'- uUUUAGUGCCGCGag-GGCU-GCG-GCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 52925 | 0.66 | 0.765808 |
Target: 5'- --cGUCGcCGGCGCUCugCCGuuucaGCCGCc -3' miRNA: 3'- uuuUAGU-GCCGCGAG--GGCug---CGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 9448 | 0.66 | 0.775273 |
Target: 5'- ----aCACGGcCGUcgUCUCGGCGgCGCAg -3' miRNA: 3'- uuuuaGUGCC-GCG--AGGGCUGCgGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 43846 | 0.66 | 0.793805 |
Target: 5'- ----gCGCGGC-CgUCCGACGCgGCAa -3' miRNA: 3'- uuuuaGUGCCGcGaGGGCUGCGgCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 4551 | 0.67 | 0.696703 |
Target: 5'- --uAUCACGGCGC-CCagcGCGCUGUg -3' miRNA: 3'- uuuUAGUGCCGCGaGGgc-UGCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 1920 | 0.68 | 0.645503 |
Target: 5'- ----cCGcCGGCGCUUugUCGACGCCGUc -3' miRNA: 3'- uuuuaGU-GCCGCGAG--GGCUGCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 124075 | 0.69 | 0.624887 |
Target: 5'- cAGAUgCACGGCGCg-CUGAUGCgCGCGg -3' miRNA: 3'- uUUUA-GUGCCGCGagGGCUGCG-GCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 64145 | 0.71 | 0.465391 |
Target: 5'- -cGGUCACucaGCGCgucgcgCCCGugGCCGCc -3' miRNA: 3'- uuUUAGUGc--CGCGa-----GGGCugCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 49307 | 0.71 | 0.503665 |
Target: 5'- ----gCGCGGCGCggucauuggaCgCGGCGCCGCAc -3' miRNA: 3'- uuuuaGUGCCGCGa---------GgGCUGCGGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 35806 | 0.7 | 0.543241 |
Target: 5'- --uGUUuCGGCuGCccgaCCCGGCGCCGCAc -3' miRNA: 3'- uuuUAGuGCCG-CGa---GGGCUGCGGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 48674 | 0.7 | 0.563415 |
Target: 5'- -uGGUCGCGGUGCUgCUGGUGCCuGCGg -3' miRNA: 3'- uuUUAGUGCCGCGAgGGCUGCGG-CGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 60074 | 0.69 | 0.583784 |
Target: 5'- cGAGUCGCGGUuguuugcgccaaGCUCCuCGuCGCUGCu -3' miRNA: 3'- uUUUAGUGCCG------------CGAGG-GCuGCGGCGu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 40510 | 0.69 | 0.604294 |
Target: 5'- ---cUUGCGGCGCU-UCGACGCCGg- -3' miRNA: 3'- uuuuAGUGCCGCGAgGGCUGCGGCgu -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 118783 | 0.69 | 0.604294 |
Target: 5'- ----gCGCGGCGCggCCGGCG-CGCAc -3' miRNA: 3'- uuuuaGUGCCGCGagGGCUGCgGCGU- -5' |
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21196 | 5' | -57.8 | NC_004778.3 | + | 120968 | 0.69 | 0.624887 |
Target: 5'- ----gCGCGGgccgcgccCGCUgcCCCGGCGCCGCc -3' miRNA: 3'- uuuuaGUGCC--------GCGA--GGGCUGCGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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