miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 5' -57.8 NC_004778.3 + 124075 0.69 0.624887
Target:  5'- cAGAUgCACGGCGCg-CUGAUGCgCGCGg -3'
miRNA:   3'- uUUUA-GUGCCGCGagGGCUGCG-GCGU- -5'
21196 5' -57.8 NC_004778.3 + 120968 0.69 0.624887
Target:  5'- ----gCGCGGgccgcgccCGCUgcCCCGGCGCCGCc -3'
miRNA:   3'- uuuuaGUGCC--------GCGA--GGGCUGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 119153 0.67 0.736726
Target:  5'- cGAAGUCGCGaGCGCcUuuGcaauGCGCCGCc -3'
miRNA:   3'- -UUUUAGUGC-CGCGaGggC----UGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 118783 0.69 0.604294
Target:  5'- ----gCGCGGCGCggCCGGCG-CGCAc -3'
miRNA:   3'- uuuuaGUGCCGCGagGGCUGCgGCGU- -5'
21196 5' -57.8 NC_004778.3 + 114927 0.68 0.676324
Target:  5'- uGAcgCACGcGCGUcacggUCUCGuCGCCGCAa -3'
miRNA:   3'- uUUuaGUGC-CGCG-----AGGGCuGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 108292 1.06 0.002302
Target:  5'- cAAAAUCACGGCGCUCCCGACGCCGCAg -3'
miRNA:   3'- -UUUUAGUGCCGCGAGGGCUGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 96074 0.68 0.645503
Target:  5'- -----gACGGCGCgucgUCCgCGACGUCGCc -3'
miRNA:   3'- uuuuagUGCCGCG----AGG-GCUGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 95254 0.67 0.696703
Target:  5'- ----gCAUGGUGCgCCgCGGCGaCCGCAc -3'
miRNA:   3'- uuuuaGUGCCGCGaGG-GCUGC-GGCGU- -5'
21196 5' -57.8 NC_004778.3 + 94981 0.67 0.716861
Target:  5'- ----cCGCGguGCGCUCCuCGACG-CGCAg -3'
miRNA:   3'- uuuuaGUGC--CGCGAGG-GCUGCgGCGU- -5'
21196 5' -57.8 NC_004778.3 + 91812 0.67 0.736726
Target:  5'- -cGGUCACGGCGC-CgCCGAuuuuuuuacCGCUGUg -3'
miRNA:   3'- uuUUAGUGCCGCGaG-GGCU---------GCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 90704 0.67 0.696703
Target:  5'- uGGAUgCGCGGCgGCUCCaaccUGCCGCAa -3'
miRNA:   3'- uUUUA-GUGCCG-CGAGGgcu-GCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 86303 0.73 0.376977
Target:  5'- aAAAcgUGCGGCGCgCCgCGGCGCCGUc -3'
miRNA:   3'- -UUUuaGUGCCGCGaGG-GCUGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 85692 0.66 0.781822
Target:  5'- -cGAUCGCGcGCgGUggacacaugaugugUCCCGGCGCgGCGc -3'
miRNA:   3'- uuUUAGUGC-CG-CG--------------AGGGCUGCGgCGU- -5'
21196 5' -57.8 NC_004778.3 + 85271 0.66 0.756222
Target:  5'- ----aCACGGCGCccgcguccaUgCCGuCGCCGCc -3'
miRNA:   3'- uuuuaGUGCCGCG---------AgGGCuGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 85119 0.66 0.756222
Target:  5'- ---cUCGCGGCGCcgCUCGuCGCUgGCGg -3'
miRNA:   3'- uuuuAGUGCCGCGa-GGGCuGCGG-CGU- -5'
21196 5' -57.8 NC_004778.3 + 81499 0.71 0.493963
Target:  5'- -----aGCGGCGCUgCCCuuaGCGCCGCu -3'
miRNA:   3'- uuuuagUGCCGCGA-GGGc--UGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 80708 0.7 0.563415
Target:  5'- aAGAGUCguGCGuGCGaaCCCGuCGCCGCGg -3'
miRNA:   3'- -UUUUAG--UGC-CGCgaGGGCuGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 68060 0.67 0.696703
Target:  5'- ---cUCAaacUGGCGCUCagcgacgacgcgCCGGCGCCGUc -3'
miRNA:   3'- uuuuAGU---GCCGCGAG------------GGCUGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 67414 0.69 0.635196
Target:  5'- ---uUgGCGcCGCUCUCGGCGuCCGCAg -3'
miRNA:   3'- uuuuAgUGCcGCGAGGGCUGC-GGCGU- -5'
21196 5' -57.8 NC_004778.3 + 64145 0.71 0.465391
Target:  5'- -cGGUCACucaGCGCgucgcgCCCGugGCCGCc -3'
miRNA:   3'- uuUUAGUGc--CGCGa-----GGGCugCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.