Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21199 | 5' | -54.7 | NC_004778.3 | + | 38786 | 0.71 | 0.732881 |
Target: 5'- gCGUCGACCGCGCUgacgUUGAcggcGUGCGc- -3' miRNA: 3'- -GCGGCUGGCGCGAaa--AGCU----CAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 80525 | 0.71 | 0.742655 |
Target: 5'- gCGCCGACCuCGUg-UUCGAGU-CGGa -3' miRNA: 3'- -GCGGCUGGcGCGaaAAGCUCAuGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 10260 | 0.7 | 0.77136 |
Target: 5'- gCGCCGAUUGCGCg---CGGGaccgGCGGc -3' miRNA: 3'- -GCGGCUGGCGCGaaaaGCUCa---UGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 6670 | 0.7 | 0.77136 |
Target: 5'- gCGCCGACUcCaCUUUUCGAGUACa-- -3' miRNA: 3'- -GCGGCUGGcGcGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 28597 | 0.7 | 0.789889 |
Target: 5'- uGUCGuuUGCGCguggcgUCGAcGUGCGGGg -3' miRNA: 3'- gCGGCugGCGCGaaa---AGCU-CAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 95790 | 0.69 | 0.825171 |
Target: 5'- gCGCCGGCCGCGCUg--CGccc-CGuGGa -3' miRNA: 3'- -GCGGCUGGCGCGAaaaGCucauGC-CC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 80132 | 0.69 | 0.83107 |
Target: 5'- gCGCCGcguccaaugaccgcGCCGCGCUgUUCGgcgacaagagcGGUAUGGa -3' miRNA: 3'- -GCGGC--------------UGGCGCGAaAAGC-----------UCAUGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 122468 | 0.69 | 0.833572 |
Target: 5'- gCGCCGACCuuGCUUUUUGA-UACGa- -3' miRNA: 3'- -GCGGCUGGcgCGAAAAGCUcAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 66878 | 0.69 | 0.841789 |
Target: 5'- gCGUCGgcGCCGUuuuUUUUUCGAGUACGGc -3' miRNA: 3'- -GCGGC--UGGCGc--GAAAAGCUCAUGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 12746 | 0.69 | 0.841789 |
Target: 5'- gCGCCGAUUcCGCUgucgggCGAGcUugGGGa -3' miRNA: 3'- -GCGGCUGGcGCGAaaa---GCUC-AugCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 61303 | 0.69 | 0.849816 |
Target: 5'- uCGCCGA-CGUGCga---GAGUACGGc -3' miRNA: 3'- -GCGGCUgGCGCGaaaagCUCAUGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 50080 | 0.69 | 0.849816 |
Target: 5'- gGCacaGACCGCGCga-UCGAuauaccacgGCGGGg -3' miRNA: 3'- gCGg--CUGGCGCGaaaAGCUca-------UGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 92732 | 0.69 | 0.849816 |
Target: 5'- gCGCCGGCggugCGCGuCUUggCGAGcGCGGu -3' miRNA: 3'- -GCGGCUG----GCGC-GAAaaGCUCaUGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 124816 | 0.68 | 0.872684 |
Target: 5'- gCGCCGACCcCGCUUUUa-AGUACa-- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAgcUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 91227 | 0.68 | 0.879883 |
Target: 5'- gGCCGugCGCaGCga--CGAGUACGcGa -3' miRNA: 3'- gCGGCugGCG-CGaaaaGCUCAUGC-Cc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 94956 | 0.68 | 0.879883 |
Target: 5'- uGCCGGCCGCGCacggucCGAG-ACGc- -3' miRNA: 3'- gCGGCUGGCGCGaaaa--GCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 62578 | 0.68 | 0.884791 |
Target: 5'- gCGCCGACgccuaaagauagcaCuCGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG--------------GcGCGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 42642 | 0.68 | 0.886861 |
Target: 5'- cCGCCGACgGUGCa---CGAGUGCa-- -3' miRNA: 3'- -GCGGCUGgCGCGaaaaGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 66760 | 0.68 | 0.886861 |
Target: 5'- gCGCCGACCuCaCUUUUCGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGcGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29527 | 0.67 | 0.906426 |
Target: 5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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