Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21199 | 5' | -54.7 | NC_004778.3 | + | 66694 | 0.79 | 0.321365 |
Target: 5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 19919 | 0.79 | 0.336267 |
Target: 5'- gCGCCGACCuCGCUUUUCGAGaACGc- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 30085 | 0.78 | 0.351667 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 66562 | 0.78 | 0.351667 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 20040 | 0.78 | 0.351667 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGaACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 19754 | 0.78 | 0.351667 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105243 | 0.78 | 0.383941 |
Target: 5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105441 | 0.78 | 0.383941 |
Target: 5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105639 | 0.78 | 0.383941 |
Target: 5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 19974 | 0.77 | 0.39231 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGcACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 6469 | 0.76 | 0.463338 |
Target: 5'- gCGCCaACCcCGCUUUUCGGGUACGa- -3' miRNA: 3'- -GCGGcUGGcGCGAAAAGCUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 122153 | 0.75 | 0.520767 |
Target: 5'- gCGCCGACCuuGCUUUUCaAGUACGa- -3' miRNA: 3'- -GCGGCUGGcgCGAAAAGcUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 85452 | 0.73 | 0.601131 |
Target: 5'- cCGCCGGCCGCGCg--UUGGGcgGCGc- -3' miRNA: 3'- -GCGGCUGGCGCGaaaAGCUCa-UGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 124938 | 0.73 | 0.611351 |
Target: 5'- gCGCCGACCcCGCUUUU-GAGUACa-- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAgCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 4972 | 0.72 | 0.651285 |
Target: 5'- gCGCCGcgacauuGCCacGCGCguugUUUCGAGaACGGGu -3' miRNA: 3'- -GCGGC-------UGG--CGCGa---AAAGCUCaUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29857 | 0.72 | 0.672721 |
Target: 5'- gCGCCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29791 | 0.72 | 0.672721 |
Target: 5'- gCGCCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 125725 | 0.71 | 0.71308 |
Target: 5'- aCGCCGaaauGCCGCGCg--UUG-GUACGGc -3' miRNA: 3'- -GCGGC----UGGCGCGaaaAGCuCAUGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 111982 | 0.71 | 0.731899 |
Target: 5'- gGCCaGGCUGCGCgagaUUUCGcAGUugaaacgGCGGGg -3' miRNA: 3'- gCGG-CUGGCGCGa---AAAGC-UCA-------UGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 38786 | 0.71 | 0.732881 |
Target: 5'- gCGUCGACCGCGCUgacgUUGAcggcGUGCGc- -3' miRNA: 3'- -GCGGCUGGCGCGAaa--AGCU----CAUGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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