miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21199 5' -54.7 NC_004778.3 + 122562 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 122672 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 122500 0.89 0.082569
Target:  5'- gCGCCGACCuCGCUUUUCGGGaACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 66431 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122249 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122315 0.87 0.113408
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122413 0.87 0.113408
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122190 0.86 0.132605
Target:  5'- gCGCCGACCuuGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 66562 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 20040 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGaACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 19754 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 19919 0.79 0.336267
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGc- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 66694 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 66628 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 19819 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 105375 1.1 0.003498
Target:  5'- gCGCCGACCGCGCUUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGCGCGAAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 33966 0.66 0.943802
Target:  5'- uGCCGGCCaaCGaaaUUUCGgucacgucggGGUGCGGGg -3'
miRNA:   3'- gCGGCUGGc-GCga-AAAGC----------UCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 6552 0.66 0.934317
Target:  5'- gCGCCGACCcCGCUUUcCaAGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAaGcUCAUGccc -5'
21199 5' -54.7 NC_004778.3 + 93041 0.66 0.929217
Target:  5'- gGUCGGCCGCGUgga-CGGcgAUGGGg -3'
miRNA:   3'- gCGGCUGGCGCGaaaaGCUcaUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 10665 0.67 0.918299
Target:  5'- gCGCCGGCCGCGCcgcgccCGAa-GCGuGGc -3'
miRNA:   3'- -GCGGCUGGCGCGaaaa--GCUcaUGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.