Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21199 | 5' | -54.7 | NC_004778.3 | + | 38786 | 0.71 | 0.732881 |
Target: 5'- gCGUCGACCGCGCUgacgUUGAcggcGUGCGc- -3' miRNA: 3'- -GCGGCUGGCGCGAaa--AGCU----CAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 111982 | 0.71 | 0.731899 |
Target: 5'- gGCCaGGCUGCGCgagaUUUCGcAGUugaaacgGCGGGg -3' miRNA: 3'- gCGG-CUGGCGCGa---AAAGC-UCA-------UGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29791 | 0.72 | 0.672721 |
Target: 5'- gCGCCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29857 | 0.72 | 0.672721 |
Target: 5'- gCGCCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 85452 | 0.73 | 0.601131 |
Target: 5'- cCGCCGGCCGCGCg--UUGGGcgGCGc- -3' miRNA: 3'- -GCGGCUGGCGCGaaaAGCUCa-UGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 6469 | 0.76 | 0.463338 |
Target: 5'- gCGCCaACCcCGCUUUUCGGGUACGa- -3' miRNA: 3'- -GCGGcUGGcGCGAAAAGCUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105639 | 0.78 | 0.383941 |
Target: 5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 92732 | 0.69 | 0.849816 |
Target: 5'- gCGCCGGCggugCGCGuCUUggCGAGcGCGGu -3' miRNA: 3'- -GCGGCUG----GCGC-GAAaaGCUCaUGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 91227 | 0.68 | 0.879883 |
Target: 5'- gGCCGugCGCaGCga--CGAGUACGcGa -3' miRNA: 3'- gCGGCugGCG-CGaaaaGCUCAUGC-Cc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 33966 | 0.66 | 0.943802 |
Target: 5'- uGCCGGCCaaCGaaaUUUCGgucacgucggGGUGCGGGg -3' miRNA: 3'- gCGGCUGGc-GCga-AAAGC----------UCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 6552 | 0.66 | 0.934317 |
Target: 5'- gCGCCGACCcCGCUUUcCaAGUACa-- -3' miRNA: 3'- -GCGGCUGGcGCGAAAaGcUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 93041 | 0.66 | 0.929217 |
Target: 5'- gGUCGGCCGCGUgga-CGGcgAUGGGg -3' miRNA: 3'- gCGGCUGGCGCGaaaaGCUcaUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 10665 | 0.67 | 0.918299 |
Target: 5'- gCGCCGGCCGCGCcgcgccCGAa-GCGuGGc -3' miRNA: 3'- -GCGGCUGGCGCGaaaa--GCUcaUGC-CC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 109578 | 0.67 | 0.908876 |
Target: 5'- gCGCCGACgcaCGUuuaaagauagcacucGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 109422 | 0.67 | 0.908876 |
Target: 5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 62769 | 0.67 | 0.908876 |
Target: 5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 62703 | 0.67 | 0.908876 |
Target: 5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29659 | 0.67 | 0.906426 |
Target: 5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29527 | 0.67 | 0.906426 |
Target: 5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 62578 | 0.68 | 0.884791 |
Target: 5'- gCGCCGACgccuaaagauagcaCuCGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG--------------GcGCGAAAAGCUCAUGccc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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