miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21200 5' -54.7 NC_004778.3 + 30085 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 33966 0.66 0.943802
Target:  5'- uGCCGGCCaaCGaaaUUUCGgucacgucggGGUGCGGGg -3'
miRNA:   3'- gCGGCUGGc-GCga-AAAGC----------UCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 34313 0.66 0.943802
Target:  5'- uGCCGGCgCGUGCUggaaCuGGUGCaGGGc -3'
miRNA:   3'- gCGGCUG-GCGCGAaaa-GcUCAUG-CCC- -5'
21200 5' -54.7 NC_004778.3 + 34503 0.66 0.938703
Target:  5'- cCGCCGACuCGCGCUaccgcgugcugcUUauguccaUCaAGUGCGGcGg -3'
miRNA:   3'- -GCGGCUG-GCGCGA------------AA-------AGcUCAUGCC-C- -5'
21200 5' -54.7 NC_004778.3 + 38786 0.71 0.732881
Target:  5'- gCGUCGACCGCGCUgacgUUGAcggcGUGCGc- -3'
miRNA:   3'- -GCGGCUGGCGCGAaa--AGCU----CAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 41691 0.66 0.94819
Target:  5'- aGUCGAUgGCGCgggcaUUG-GUAUGGGg -3'
miRNA:   3'- gCGGCUGgCGCGaaa--AGCuCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 42642 0.68 0.886861
Target:  5'- cCGCCGACgGUGCa---CGAGUGCa-- -3'
miRNA:   3'- -GCGGCUGgCGCGaaaaGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 50080 0.69 0.849816
Target:  5'- gGCacaGACCGCGCga-UCGAuauaccacgGCGGGg -3'
miRNA:   3'- gCGg--CUGGCGCGaaaAGCUca-------UGCCC- -5'
21200 5' -54.7 NC_004778.3 + 61303 0.69 0.849816
Target:  5'- uCGCCGA-CGUGCga---GAGUACGGc -3'
miRNA:   3'- -GCGGCUgGCGCGaaaagCUCAUGCCc -5'
21200 5' -54.7 NC_004778.3 + 62578 0.68 0.884791
Target:  5'- gCGCCGACgccuaaagauagcaCuCGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG--------------GcGCGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 62703 0.67 0.908876
Target:  5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 62769 0.67 0.908876
Target:  5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 66431 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 66562 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 66628 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 66694 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 66760 0.68 0.886861
Target:  5'- gCGCCGACCuCaCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGcGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 66878 0.69 0.841789
Target:  5'- gCGUCGgcGCCGUuuuUUUUUCGAGUACGGc -3'
miRNA:   3'- -GCGGC--UGGCGc--GAAAAGCUCAUGCCc -5'
21200 5' -54.7 NC_004778.3 + 80132 0.69 0.83107
Target:  5'- gCGCCGcguccaaugaccgcGCCGCGCUgUUCGgcgacaagagcGGUAUGGa -3'
miRNA:   3'- -GCGGC--------------UGGCGCGAaAAGC-----------UCAUGCCc -5'
21200 5' -54.7 NC_004778.3 + 80525 0.71 0.742655
Target:  5'- gCGCCGACCuCGUg-UUCGAGU-CGGa -3'
miRNA:   3'- -GCGGCUGGcGCGaaAAGCUCAuGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.