miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21200 5' -54.7 NC_004778.3 + 4972 0.72 0.651285
Target:  5'- gCGCCGcgacauuGCCacGCGCguugUUUCGAGaACGGGu -3'
miRNA:   3'- -GCGGC-------UGG--CGCGa---AAAGCUCaUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 6469 0.76 0.463338
Target:  5'- gCGCCaACCcCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGcUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 6552 0.66 0.934317
Target:  5'- gCGCCGACCcCGCUUUcCaAGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAaGcUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 6670 0.7 0.77136
Target:  5'- gCGCCGACUcCaCUUUUCGAGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGcGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 10260 0.7 0.77136
Target:  5'- gCGCCGAUUGCGCg---CGGGaccgGCGGc -3'
miRNA:   3'- -GCGGCUGGCGCGaaaaGCUCa---UGCCc -5'
21200 5' -54.7 NC_004778.3 + 10665 0.67 0.918299
Target:  5'- gCGCCGGCCGCGCcgcgccCGAa-GCGuGGc -3'
miRNA:   3'- -GCGGCUGGCGCGaaaa--GCUcaUGC-CC- -5'
21200 5' -54.7 NC_004778.3 + 12746 0.69 0.841789
Target:  5'- gCGCCGAUUcCGCUgucgggCGAGcUugGGGa -3'
miRNA:   3'- -GCGGCUGGcGCGAaaa---GCUC-AugCCC- -5'
21200 5' -54.7 NC_004778.3 + 19688 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 19754 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 19819 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 19919 0.79 0.336267
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGc- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 19974 0.77 0.39231
Target:  5'- gCGCCGACCuCGCUUUUCGGGcACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 20040 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGaACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 28597 0.7 0.789889
Target:  5'- uGUCGuuUGCGCguggcgUCGAcGUGCGGGg -3'
miRNA:   3'- gCGGCugGCGCGaaa---AGCU-CAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 29527 0.67 0.906426
Target:  5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 29659 0.67 0.906426
Target:  5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 29791 0.72 0.672721
Target:  5'- gCGCCGACCcUGCUUUUUGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 29857 0.72 0.672721
Target:  5'- gCGCCGACCcUGCUUUUUGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 29961 0.85 0.139644
Target:  5'- gCGCCGACCcUGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 30027 0.8 0.273133
Target:  5'- gCGCCGACCuCGCUUUcCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAaGCUCAUGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.