miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21200 5' -54.7 NC_004778.3 + 105573 1.1 0.003498
Target:  5'- gCGCCGACCGCGCUUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGCGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 105375 1.1 0.003498
Target:  5'- gCGCCGACCGCGCUUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGCGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 105176 1.03 0.010046
Target:  5'- gCGCCGACCGCGCuUUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGCGCG-AAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 19688 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 122562 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 122672 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 105507 0.91 0.059833
Target:  5'- gCGCCGACCuCGCgUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGcGCGaAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 105309 0.91 0.059833
Target:  5'- gCGCCGACCuCGCgUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGcGCGaAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 105110 0.91 0.059833
Target:  5'- gCGCCGACCuCGCgUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGcGCGaAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 122500 0.89 0.082569
Target:  5'- gCGCCGACCuCGCUUUUCGGGaACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 66431 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122249 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122315 0.87 0.113408
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122413 0.87 0.113408
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122190 0.86 0.132605
Target:  5'- gCGCCGACCuuGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 29961 0.85 0.139644
Target:  5'- gCGCCGACCcUGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 105044 0.83 0.19918
Target:  5'- aCGCCGACCGUGCUUUUCuGGUACa-- -3'
miRNA:   3'- -GCGGCUGGCGCGAAAAGcUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 30027 0.8 0.273133
Target:  5'- gCGCCGACCuCGCUUUcCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAaGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 66694 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 19819 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.