miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21200 5' -54.7 NC_004778.3 + 125725 0.71 0.71308
Target:  5'- aCGCCGaaauGCCGCGCg--UUG-GUACGGc -3'
miRNA:   3'- -GCGGC----UGGCGCGaaaAGCuCAUGCCc -5'
21200 5' -54.7 NC_004778.3 + 19919 0.79 0.336267
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGc- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 19754 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 20040 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGaACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 66562 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 19974 0.77 0.39231
Target:  5'- gCGCCGACCuCGCUUUUCGGGcACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122153 0.75 0.520767
Target:  5'- gCGCCGACCuuGCUUUUCaAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGcUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 124938 0.73 0.611351
Target:  5'- gCGCCGACCcCGCUUUU-GAGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAgCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 4972 0.72 0.651285
Target:  5'- gCGCCGcgacauuGCCacGCGCguugUUUCGAGaACGGGu -3'
miRNA:   3'- -GCGGC-------UGG--CGCGa---AAAGCUCaUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 66694 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 66628 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 19819 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122562 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 122672 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 122500 0.89 0.082569
Target:  5'- gCGCCGACCuCGCUUUUCGGGaACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 66431 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122249 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122315 0.87 0.113408
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122413 0.87 0.113408
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122190 0.86 0.132605
Target:  5'- gCGCCGACCuuGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGCUCAUGCcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.