miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21200 5' -54.7 NC_004778.3 + 125725 0.71 0.71308
Target:  5'- aCGCCGaaauGCCGCGCg--UUG-GUACGGc -3'
miRNA:   3'- -GCGGC----UGGCGCGaaaAGCuCAUGCCc -5'
21200 5' -54.7 NC_004778.3 + 124938 0.73 0.611351
Target:  5'- gCGCCGACCcCGCUUUU-GAGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAgCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 124816 0.68 0.872684
Target:  5'- gCGCCGACCcCGCUUUUa-AGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAgcUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 122672 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 122624 0.71 0.732881
Target:  5'- gCGCCGACCuCGCUUUUcucgaaaagCGAGUGCu-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAA---------GCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 122562 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 122500 0.89 0.082569
Target:  5'- gCGCCGACCuCGCUUUUCGGGaACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 122468 0.69 0.833572
Target:  5'- gCGCCGACCuuGCUUUUUGA-UACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGCUcAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122413 0.87 0.113408
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122315 0.87 0.113408
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122249 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122190 0.86 0.132605
Target:  5'- gCGCCGACCuuGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGCUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 122153 0.75 0.520767
Target:  5'- gCGCCGACCuuGCUUUUCaAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGcUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 111982 0.71 0.731899
Target:  5'- gGCCaGGCUGCGCgagaUUUCGcAGUugaaacgGCGGGg -3'
miRNA:   3'- gCGG-CUGGCGCGa---AAAGC-UCA-------UGCCC- -5'
21200 5' -54.7 NC_004778.3 + 109578 0.67 0.908876
Target:  5'- gCGCCGACgcaCGUuuaaagauagcacucGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 109422 0.67 0.908876
Target:  5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 105639 0.78 0.383941
Target:  5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 105573 1.1 0.003498
Target:  5'- gCGCCGACCGCGCUUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGCGCGAAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 105507 0.91 0.059833
Target:  5'- gCGCCGACCuCGCgUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGcGCGaAAAGCUCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 105466 0.66 0.943802
Target:  5'- gGCCGAucCCGCGCc--UCGgacggaAGcGCGGGa -3'
miRNA:   3'- gCGGCU--GGCGCGaaaAGC------UCaUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.