Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21200 | 5' | -54.7 | NC_004778.3 | + | 85452 | 0.73 | 0.601131 |
Target: 5'- cCGCCGGCCGCGCg--UUGGGcgGCGc- -3' miRNA: 3'- -GCGGCUGGCGCGaaaAGCUCa-UGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 122153 | 0.75 | 0.520767 |
Target: 5'- gCGCCGACCuuGCUUUUCaAGUACGa- -3' miRNA: 3'- -GCGGCUGGcgCGAAAAGcUCAUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 6469 | 0.76 | 0.463338 |
Target: 5'- gCGCCaACCcCGCUUUUCGGGUACGa- -3' miRNA: 3'- -GCGGcUGGcGCGAAAAGCUCAUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 19974 | 0.77 | 0.39231 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGcACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 105441 | 0.78 | 0.383941 |
Target: 5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 105243 | 0.78 | 0.383941 |
Target: 5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 105639 | 0.78 | 0.383941 |
Target: 5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 19754 | 0.78 | 0.351667 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 66562 | 0.78 | 0.351667 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 30085 | 0.78 | 0.351667 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 20040 | 0.78 | 0.351667 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGaACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 19919 | 0.79 | 0.336267 |
Target: 5'- gCGCCGACCuCGCUUUUCGAGaACGc- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 66694 | 0.79 | 0.321365 |
Target: 5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 19819 | 0.79 | 0.321365 |
Target: 5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 66628 | 0.79 | 0.321365 |
Target: 5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 30027 | 0.8 | 0.273133 |
Target: 5'- gCGCCGACCuCGCUUUcCGAGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAaGCUCAUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 105044 | 0.83 | 0.19918 |
Target: 5'- aCGCCGACCGUGCUUUUCuGGUACa-- -3' miRNA: 3'- -GCGGCUGGCGCGAAAAGcUCAUGccc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 29961 | 0.85 | 0.139644 |
Target: 5'- gCGCCGACCcUGCUUUUCGAGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 122190 | 0.86 | 0.132605 |
Target: 5'- gCGCCGACCuuGCUUUUCGAGUACGa- -3' miRNA: 3'- -GCGGCUGGcgCGAAAAGCUCAUGCcc -5' |
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21200 | 5' | -54.7 | NC_004778.3 | + | 122315 | 0.87 | 0.113408 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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