miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21200 5' -54.7 NC_004778.3 + 61303 0.69 0.849816
Target:  5'- uCGCCGA-CGUGCga---GAGUACGGc -3'
miRNA:   3'- -GCGGCUgGCGCGaaaagCUCAUGCCc -5'
21200 5' -54.7 NC_004778.3 + 50080 0.69 0.849816
Target:  5'- gGCacaGACCGCGCga-UCGAuauaccacgGCGGGg -3'
miRNA:   3'- gCGg--CUGGCGCGaaaAGCUca-------UGCCC- -5'
21200 5' -54.7 NC_004778.3 + 92732 0.69 0.849816
Target:  5'- gCGCCGGCggugCGCGuCUUggCGAGcGCGGu -3'
miRNA:   3'- -GCGGCUG----GCGC-GAAaaGCUCaUGCCc -5'
21200 5' -54.7 NC_004778.3 + 66878 0.69 0.841789
Target:  5'- gCGUCGgcGCCGUuuuUUUUUCGAGUACGGc -3'
miRNA:   3'- -GCGGC--UGGCGc--GAAAAGCUCAUGCCc -5'
21200 5' -54.7 NC_004778.3 + 12746 0.69 0.841789
Target:  5'- gCGCCGAUUcCGCUgucgggCGAGcUugGGGa -3'
miRNA:   3'- -GCGGCUGGcGCGAaaa---GCUC-AugCCC- -5'
21200 5' -54.7 NC_004778.3 + 122468 0.69 0.833572
Target:  5'- gCGCCGACCuuGCUUUUUGA-UACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGCUcAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 80132 0.69 0.83107
Target:  5'- gCGCCGcguccaaugaccgcGCCGCGCUgUUCGgcgacaagagcGGUAUGGa -3'
miRNA:   3'- -GCGGC--------------UGGCGCGAaAAGC-----------UCAUGCCc -5'
21200 5' -54.7 NC_004778.3 + 95790 0.69 0.825171
Target:  5'- gCGCCGGCCGCGCUg--CGccc-CGuGGa -3'
miRNA:   3'- -GCGGCUGGCGCGAaaaGCucauGC-CC- -5'
21200 5' -54.7 NC_004778.3 + 28597 0.7 0.789889
Target:  5'- uGUCGuuUGCGCguggcgUCGAcGUGCGGGg -3'
miRNA:   3'- gCGGCugGCGCGaaa---AGCU-CAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 6670 0.7 0.77136
Target:  5'- gCGCCGACUcCaCUUUUCGAGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGcGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 10260 0.7 0.77136
Target:  5'- gCGCCGAUUGCGCg---CGGGaccgGCGGc -3'
miRNA:   3'- -GCGGCUGGCGCGaaaaGCUCa---UGCCc -5'
21200 5' -54.7 NC_004778.3 + 80525 0.71 0.742655
Target:  5'- gCGCCGACCuCGUg-UUCGAGU-CGGa -3'
miRNA:   3'- -GCGGCUGGcGCGaaAAGCUCAuGCCc -5'
21200 5' -54.7 NC_004778.3 + 122624 0.71 0.732881
Target:  5'- gCGCCGACCuCGCUUUUcucgaaaagCGAGUGCu-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAA---------GCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 38786 0.71 0.732881
Target:  5'- gCGUCGACCGCGCUgacgUUGAcggcGUGCGc- -3'
miRNA:   3'- -GCGGCUGGCGCGAaa--AGCU----CAUGCcc -5'
21200 5' -54.7 NC_004778.3 + 111982 0.71 0.731899
Target:  5'- gGCCaGGCUGCGCgagaUUUCGcAGUugaaacgGCGGGg -3'
miRNA:   3'- gCGG-CUGGCGCGa---AAAGC-UCA-------UGCCC- -5'
21200 5' -54.7 NC_004778.3 + 125725 0.71 0.71308
Target:  5'- aCGCCGaaauGCCGCGCg--UUG-GUACGGc -3'
miRNA:   3'- -GCGGC----UGGCGCGaaaAGCuCAUGCCc -5'
21200 5' -54.7 NC_004778.3 + 29857 0.72 0.672721
Target:  5'- gCGCCGACCcUGCUUUUUGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 29791 0.72 0.672721
Target:  5'- gCGCCGACCcUGCUUUUUGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 4972 0.72 0.651285
Target:  5'- gCGCCGcgacauuGCCacGCGCguugUUUCGAGaACGGGu -3'
miRNA:   3'- -GCGGC-------UGG--CGCGa---AAAGCUCaUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 124938 0.73 0.611351
Target:  5'- gCGCCGACCcCGCUUUU-GAGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAgCUCAUGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.