miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21204 3' -52.2 NC_004778.3 + 98428 1.08 0.005324
Target:  5'- gUACAGCACGGGCUUAAACGCUAGCGAg -3'
miRNA:   3'- -AUGUCGUGCCCGAAUUUGCGAUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 35844 0.77 0.460924
Target:  5'- cACAGCAUGGGUguUUGGugGCUuuuGGCGGg -3'
miRNA:   3'- aUGUCGUGCCCG--AAUUugCGA---UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 94733 0.75 0.584621
Target:  5'- -cCAGCACGGGCgucuGGCuGCUGGcCGAg -3'
miRNA:   3'- auGUCGUGCCCGaau-UUG-CGAUC-GCU- -5'
21204 3' -52.2 NC_004778.3 + 65289 0.74 0.638442
Target:  5'- gGCGGcCACGGGCgc-GACGCgcugAGUGAc -3'
miRNA:   3'- aUGUC-GUGCCCGaauUUGCGa---UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 96422 0.71 0.774526
Target:  5'- cGCGGCAaGGGUgcugGAACGC-GGCGAu -3'
miRNA:   3'- aUGUCGUgCCCGaa--UUUGCGaUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 95019 0.71 0.774526
Target:  5'- aGCAGUACGGGCacgccGCGCUGcCGGa -3'
miRNA:   3'- aUGUCGUGCCCGaauu-UGCGAUcGCU- -5'
21204 3' -52.2 NC_004778.3 + 27807 0.71 0.803395
Target:  5'- cGCAuGCACGGGCcgcUUGucGCGCUcggGGCGGu -3'
miRNA:   3'- aUGU-CGUGCCCG---AAUu-UGCGA---UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 49303 0.7 0.812687
Target:  5'- aACAGCGCGGcGCggucaUUGGACGC-GGCGc -3'
miRNA:   3'- aUGUCGUGCC-CG-----AAUUUGCGaUCGCu -5'
21204 3' -52.2 NC_004778.3 + 15036 0.7 0.829831
Target:  5'- gAUAGCGCGGGUcuuguguUUGAACGUguaGGCGc -3'
miRNA:   3'- aUGUCGUGCCCG-------AAUUUGCGa--UCGCu -5'
21204 3' -52.2 NC_004778.3 + 69017 0.7 0.839431
Target:  5'- aGCAGCACGaucGGCcugAAGCGCaAGCGc -3'
miRNA:   3'- aUGUCGUGC---CCGaa-UUUGCGaUCGCu -5'
21204 3' -52.2 NC_004778.3 + 52853 0.7 0.839431
Target:  5'- aGCAGCgaaaauGCGGaggccauucaGCUUGAgauagacgcGCGCUAGCGAa -3'
miRNA:   3'- aUGUCG------UGCC----------CGAAUU---------UGCGAUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 121401 0.7 0.847939
Target:  5'- cGCGGCgAUGGGUgc--ACGCUAGCa- -3'
miRNA:   3'- aUGUCG-UGCCCGaauuUGCGAUCGcu -5'
21204 3' -52.2 NC_004778.3 + 8800 0.69 0.872126
Target:  5'- aGCGGCgaggcgGCGGGC----GCGCUcAGCGAa -3'
miRNA:   3'- aUGUCG------UGCCCGaauuUGCGA-UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 108420 0.69 0.879719
Target:  5'- cGCGGCGCaGGUggAcGCGCUGGUGc -3'
miRNA:   3'- aUGUCGUGcCCGaaUuUGCGAUCGCu -5'
21204 3' -52.2 NC_004778.3 + 94935 0.68 0.901009
Target:  5'- aGCAGCACGcGGU---AGCGCgagucGGCGGc -3'
miRNA:   3'- aUGUCGUGC-CCGaauUUGCGa----UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 988 0.68 0.901009
Target:  5'- cGCAGCAgcGGCUccAACGCgUGGCGGu -3'
miRNA:   3'- aUGUCGUgcCCGAauUUGCG-AUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 102884 0.68 0.907595
Target:  5'- aUGCGGC-CGuGCgcaccACGCUAGCGAa -3'
miRNA:   3'- -AUGUCGuGCcCGaauu-UGCGAUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 39384 0.68 0.913918
Target:  5'- gGCAGCACcacguaguugugGGGCccgg-UGCUGGCGAc -3'
miRNA:   3'- aUGUCGUG------------CCCGaauuuGCGAUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 67793 0.68 0.913918
Target:  5'- aGCAuGCGCGcGGCgUUGGcgcGCGCUGGCu- -3'
miRNA:   3'- aUGU-CGUGC-CCG-AAUU---UGCGAUCGcu -5'
21204 3' -52.2 NC_004778.3 + 14028 0.68 0.913918
Target:  5'- gGCAGCACucuuuGGGCUUuaaaaagcGAGCGUcGGUGGa -3'
miRNA:   3'- aUGUCGUG-----CCCGAA--------UUUGCGaUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.