Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21204 | 3' | -52.2 | NC_004778.3 | + | 94733 | 0.75 | 0.584621 |
Target: 5'- -cCAGCACGGGCgucuGGCuGCUGGcCGAg -3' miRNA: 3'- auGUCGUGCCCGaau-UUG-CGAUC-GCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 37828 | 0.67 | 0.950777 |
Target: 5'- aACAGCGCGcGGCgac-ACGCgUGGUGc -3' miRNA: 3'- aUGUCGUGC-CCGaauuUGCG-AUCGCu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 106931 | 0.66 | 0.958965 |
Target: 5'- gGCGGCcuCGGGCaaauauggcAAACGCgucGGCGAa -3' miRNA: 3'- aUGUCGu-GCCCGaa-------UUUGCGa--UCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 22416 | 0.66 | 0.962685 |
Target: 5'- aGCGGUACGGGC----GCGUcGGCa- -3' miRNA: 3'- aUGUCGUGCCCGaauuUGCGaUCGcu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 28705 | 0.66 | 0.962685 |
Target: 5'- aAUAGCGCucGCUgcAGCGCUgcaAGCGAu -3' miRNA: 3'- aUGUCGUGccCGAauUUGCGA---UCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 70235 | 0.66 | 0.964801 |
Target: 5'- gACAGCACGGGCgucaaaaaGUgGGCa- -3' miRNA: 3'- aUGUCGUGCCCGaauuug--CGaUCGcu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 94795 | 0.66 | 0.966165 |
Target: 5'- cUGCGGCcCGGGCUcGGACGCa----- -3' miRNA: 3'- -AUGUCGuGCCCGAaUUUGCGaucgcu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 45431 | 0.66 | 0.966165 |
Target: 5'- uUGCuGGCGCGGcGCUUAucagUGCUaaGGCGGa -3' miRNA: 3'- -AUG-UCGUGCC-CGAAUuu--GCGA--UCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 29336 | 0.66 | 0.969409 |
Target: 5'- cGCGGCGCGcGCUgggguGCGCcaAGCGGc -3' miRNA: 3'- aUGUCGUGCcCGAauu--UGCGa-UCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 22880 | 0.67 | 0.941564 |
Target: 5'- --aGGCACGGGCc----CGCU-GCGAa -3' miRNA: 3'- augUCGUGCCCGaauuuGCGAuCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 98881 | 0.67 | 0.936565 |
Target: 5'- cGCGGCacGCGGGCUUu--CGa-AGCGAc -3' miRNA: 3'- aUGUCG--UGCCCGAAuuuGCgaUCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 27807 | 0.71 | 0.803395 |
Target: 5'- cGCAuGCACGGGCcgcUUGucGCGCUcggGGCGGu -3' miRNA: 3'- aUGU-CGUGCCCG---AAUu-UGCGA---UCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 49303 | 0.7 | 0.812687 |
Target: 5'- aACAGCGCGGcGCggucaUUGGACGC-GGCGc -3' miRNA: 3'- aUGUCGUGCC-CG-----AAUUUGCGaUCGCu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 15036 | 0.7 | 0.829831 |
Target: 5'- gAUAGCGCGGGUcuuguguUUGAACGUguaGGCGc -3' miRNA: 3'- aUGUCGUGCCCG-------AAUUUGCGa--UCGCu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 8800 | 0.69 | 0.872126 |
Target: 5'- aGCGGCgaggcgGCGGGC----GCGCUcAGCGAa -3' miRNA: 3'- aUGUCG------UGCCCGaauuUGCGA-UCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 108420 | 0.69 | 0.879719 |
Target: 5'- cGCGGCGCaGGUggAcGCGCUGGUGc -3' miRNA: 3'- aUGUCGUGcCCGaaUuUGCGAUCGCu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 988 | 0.68 | 0.901009 |
Target: 5'- cGCAGCAgcGGCUccAACGCgUGGCGGu -3' miRNA: 3'- aUGUCGUgcCCGAauUUGCG-AUCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 39384 | 0.68 | 0.913918 |
Target: 5'- gGCAGCACcacguaguugugGGGCccgg-UGCUGGCGAc -3' miRNA: 3'- aUGUCGUG------------CCCGaauuuGCGAUCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 49849 | 0.67 | 0.931301 |
Target: 5'- ---cGCACGGGC----GCGCUuGCGGg -3' miRNA: 3'- auguCGUGCCCGaauuUGCGAuCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 98428 | 1.08 | 0.005324 |
Target: 5'- gUACAGCACGGGCUUAAACGCUAGCGAg -3' miRNA: 3'- -AUGUCGUGCCCGAAUUUGCGAUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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