miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21205 3' -65.5 NC_004778.3 + 97159 1.09 0.000363
Target:  5'- aCCAGCCCGACACGGCGCCGCCGGCCAg -3'
miRNA:   3'- -GGUCGGGCUGUGCCGCGGCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 90451 0.76 0.110147
Target:  5'- gUCGGCCUGGCuugcuACGGCGCCGCCGuGaUCAa -3'
miRNA:   3'- -GGUCGGGCUG-----UGCCGCGGCGGC-C-GGU- -5'
21205 3' -65.5 NC_004778.3 + 121511 0.75 0.132129
Target:  5'- aCUAGCgUCGcCGCGcuaaaggugagguaaGCGCCGCCGGCCAg -3'
miRNA:   3'- -GGUCG-GGCuGUGC---------------CGCGGCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 118771 0.74 0.134079
Target:  5'- gCCAcGCUUcgGGCGCGGCGCgGCCGGCg- -3'
miRNA:   3'- -GGU-CGGG--CUGUGCCGCGgCGGCCGgu -5'
21205 3' -65.5 NC_004778.3 + 80043 0.73 0.162717
Target:  5'- gCAGUauaCCGAguaCGCGGCGCUgGCCGGCCc -3'
miRNA:   3'- gGUCG---GGCU---GUGCCGCGG-CGGCCGGu -5'
21205 3' -65.5 NC_004778.3 + 101930 0.73 0.174394
Target:  5'- gCCAGCCCGggguauucgucgaACACGGCcauGUgGUCGGCCc -3'
miRNA:   3'- -GGUCGGGC-------------UGUGCCG---CGgCGGCCGGu -5'
21205 3' -65.5 NC_004778.3 + 2447 0.72 0.183309
Target:  5'- -uGGCCCGAgUGCGGCacGCCGCUGGUUAu -3'
miRNA:   3'- ggUCGGGCU-GUGCCG--CGGCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 10676 0.72 0.187253
Target:  5'- gCCGcGCCCGaagcgugGCACGuguugaguguGCGCCGCCGcGCCGa -3'
miRNA:   3'- -GGU-CGGGC-------UGUGC----------CGCGGCGGC-CGGU- -5'
21205 3' -65.5 NC_004778.3 + 61292 0.72 0.187695
Target:  5'- aCCGG-CCGACAucugguuugcUGGCGCauccaucuCGCCGGCCAc -3'
miRNA:   3'- -GGUCgGGCUGU----------GCCGCG--------GCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 120704 0.72 0.192173
Target:  5'- -uGGCgCGcCACGGCGCCGgCGGCg- -3'
miRNA:   3'- ggUCGgGCuGUGCCGCGGCgGCCGgu -5'
21205 3' -65.5 NC_004778.3 + 35813 0.72 0.196744
Target:  5'- gCuGCCCGACcCGGCGCCGCaccaacaaGcGCCu -3'
miRNA:   3'- gGuCGGGCUGuGCCGCGGCGg-------C-CGGu -5'
21205 3' -65.5 NC_004778.3 + 107939 0.72 0.20141
Target:  5'- uUCGGCCggcgGugGCGGCGCCauCCGGCCc -3'
miRNA:   3'- -GGUCGGg---CugUGCCGCGGc-GGCCGGu -5'
21205 3' -65.5 NC_004778.3 + 95761 0.72 0.206172
Target:  5'- gCCGcGCCgGGCgcuauccgcGCGGCaGCgCGCCGGCCGc -3'
miRNA:   3'- -GGU-CGGgCUG---------UGCCG-CG-GCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 114039 0.72 0.211031
Target:  5'- uCCAGCCCGuCuuUGGUcuuuagguugGCCGCgCGGCCGa -3'
miRNA:   3'- -GGUCGGGCuGu-GCCG----------CGGCG-GCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 21493 0.72 0.211031
Target:  5'- aUCGGgCCGG-AUGGCGCCgccaccGCCGGCCGa -3'
miRNA:   3'- -GGUCgGGCUgUGCCGCGG------CGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 98540 0.71 0.215988
Target:  5'- aCCAGCaCCGGCacuucuugcgACGGC-CCGUCGGUCu -3'
miRNA:   3'- -GGUCG-GGCUG----------UGCCGcGGCGGCCGGu -5'
21205 3' -65.5 NC_004778.3 + 21686 0.71 0.226201
Target:  5'- aCgAGCgCGACGCGGUGCUG-CGGuCCAa -3'
miRNA:   3'- -GgUCGgGCUGUGCCGCGGCgGCC-GGU- -5'
21205 3' -65.5 NC_004778.3 + 77092 0.71 0.242286
Target:  5'- gCCAGCCggugaaaGACACGGCuuGCgaUGCgGGCCAg -3'
miRNA:   3'- -GGUCGGg------CUGUGCCG--CG--GCGgCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 106188 0.7 0.253531
Target:  5'- -uGGCCCGACAaGGCGCCGUuuGCg- -3'
miRNA:   3'- ggUCGGGCUGUgCCGCGGCGgcCGgu -5'
21205 3' -65.5 NC_004778.3 + 43851 0.7 0.253531
Target:  5'- gCC-GUCCGACGCGGCaacaGgUGCCGGCUc -3'
miRNA:   3'- -GGuCGGGCUGUGCCG----CgGCGGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.