miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21205 3' -65.5 NC_004778.3 + 11388 0.69 0.314199
Target:  5'- gCAGCuuGGCACgcaaGGCGCaaaugcacgcuuugCGCCGcGCCAc -3'
miRNA:   3'- gGUCGggCUGUG----CCGCG--------------GCGGC-CGGU- -5'
21205 3' -65.5 NC_004778.3 + 58163 0.7 0.271198
Target:  5'- gCCA-CCCGACGuCGcCGCCGCCGccGCCGu -3'
miRNA:   3'- -GGUcGGGCUGU-GCcGCGGCGGC--CGGU- -5'
21205 3' -65.5 NC_004778.3 + 1510 0.7 0.277303
Target:  5'- --uGCCCcGCGgGGCGCUGCCgaggucGGCCAu -3'
miRNA:   3'- gguCGGGcUGUgCCGCGGCGG------CCGGU- -5'
21205 3' -65.5 NC_004778.3 + 56971 0.7 0.283517
Target:  5'- gCGGCgUGaACACGGCGCUggaccugugcgGCgGGCCAg -3'
miRNA:   3'- gGUCGgGC-UGUGCCGCGG-----------CGgCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 37603 0.69 0.289204
Target:  5'- uCCAGCCCGguuuugagcacaGCgguaaaaaaaucgGCGGCGCCGuugaCCGGCa- -3'
miRNA:   3'- -GGUCGGGC------------UG-------------UGCCGCGGC----GGCCGgu -5'
21205 3' -65.5 NC_004778.3 + 49314 0.69 0.289841
Target:  5'- gCGGUCauugGACGCGGCGCCGCacaacgugugCGGCa- -3'
miRNA:   3'- gGUCGGg---CUGUGCCGCGGCG----------GCCGgu -5'
21205 3' -65.5 NC_004778.3 + 61369 0.69 0.289841
Target:  5'- aCGGCgCCGGCGCGuCGUCGCUGagcGCCAg -3'
miRNA:   3'- gGUCG-GGCUGUGCcGCGGCGGC---CGGU- -5'
21205 3' -65.5 NC_004778.3 + 64759 0.69 0.296275
Target:  5'- aCguGCauaaaCCGugcACACGGCGCCGauGGCCAa -3'
miRNA:   3'- -GguCG-----GGC---UGUGCCGCGGCggCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 124313 0.69 0.309475
Target:  5'- gCCGGCgUgGGCACGGCGUCuuCCGGCgAg -3'
miRNA:   3'- -GGUCG-GgCUGUGCCGCGGc-GGCCGgU- -5'
21205 3' -65.5 NC_004778.3 + 35202 0.7 0.265201
Target:  5'- gCAGCuuGACuuUGGCGcCCGCCGuGUCGu -3'
miRNA:   3'- gGUCGggCUGu-GCCGC-GGCGGC-CGGU- -5'
21205 3' -65.5 NC_004778.3 + 43851 0.7 0.253531
Target:  5'- gCC-GUCCGACGCGGCaacaGgUGCCGGCUc -3'
miRNA:   3'- -GGuCGGGCUGUGCCG----CgGCGGCCGGu -5'
21205 3' -65.5 NC_004778.3 + 77092 0.71 0.242286
Target:  5'- gCCAGCCggugaaaGACACGGCuuGCgaUGCgGGCCAg -3'
miRNA:   3'- -GGUCGGg------CUGUGCCG--CG--GCGgCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 121511 0.75 0.132129
Target:  5'- aCUAGCgUCGcCGCGcuaaaggugagguaaGCGCCGCCGGCCAg -3'
miRNA:   3'- -GGUCG-GGCuGUGC---------------CGCGGCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 118771 0.74 0.134079
Target:  5'- gCCAcGCUUcgGGCGCGGCGCgGCCGGCg- -3'
miRNA:   3'- -GGU-CGGG--CUGUGCCGCGgCGGCCGgu -5'
21205 3' -65.5 NC_004778.3 + 2447 0.72 0.183309
Target:  5'- -uGGCCCGAgUGCGGCacGCCGCUGGUUAu -3'
miRNA:   3'- ggUCGGGCU-GUGCCG--CGGCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 61292 0.72 0.187695
Target:  5'- aCCGG-CCGACAucugguuugcUGGCGCauccaucuCGCCGGCCAc -3'
miRNA:   3'- -GGUCgGGCUGU----------GCCGCG--------GCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 35813 0.72 0.196744
Target:  5'- gCuGCCCGACcCGGCGCCGCaccaacaaGcGCCu -3'
miRNA:   3'- gGuCGGGCUGuGCCGCGGCGg-------C-CGGu -5'
21205 3' -65.5 NC_004778.3 + 95761 0.72 0.206172
Target:  5'- gCCGcGCCgGGCgcuauccgcGCGGCaGCgCGCCGGCCGc -3'
miRNA:   3'- -GGU-CGGgCUG---------UGCCG-CG-GCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 21493 0.72 0.211031
Target:  5'- aUCGGgCCGG-AUGGCGCCgccaccGCCGGCCGa -3'
miRNA:   3'- -GGUCgGGCUgUGCCGCGG------CGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 114039 0.72 0.211031
Target:  5'- uCCAGCCCGuCuuUGGUcuuuagguugGCCGCgCGGCCGa -3'
miRNA:   3'- -GGUCGGGCuGu-GCCG----------CGGCG-GCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.