Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 14791 | 0.67 | 0.814229 |
Target: 5'- cCGUGCGCAaa-CGcuuCGCGGCUGCAa- -3' miRNA: 3'- -GCAUGUGUgcaGCu--GCGCCGGCGUgu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 85455 | 0.67 | 0.814229 |
Target: 5'- cCGgcCGCGCGUUGG-GCGGCgCGC-CAa -3' miRNA: 3'- -GCauGUGUGCAGCUgCGCCG-GCGuGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 100311 | 0.67 | 0.814229 |
Target: 5'- --cACGCcUGUCcaacCGCGGCCGUACAu -3' miRNA: 3'- gcaUGUGuGCAGcu--GCGCCGGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 10267 | 0.67 | 0.805502 |
Target: 5'- -uUGCGCGCGg-GAC-CGGCgGCGCAu -3' miRNA: 3'- gcAUGUGUGCagCUGcGCCGgCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 90643 | 0.67 | 0.805502 |
Target: 5'- aCGUuuGCGCACGcCGucaacgucaGCGCGGUCGaCGCu -3' miRNA: 3'- -GCA--UGUGUGCaGC---------UGCGCCGGC-GUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 3048 | 0.67 | 0.805502 |
Target: 5'- -aUAUugAUGUCaACGCGGCaagGCACAc -3' miRNA: 3'- gcAUGugUGCAGcUGCGCCGg--CGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 53924 | 0.67 | 0.803738 |
Target: 5'- uGUGCACAacuuuaaaugCGcCGCGuGCCGCACu -3' miRNA: 3'- gCAUGUGUgca-------GCuGCGC-CGGCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 43138 | 0.67 | 0.79662 |
Target: 5'- --gGCGC-CG-CGGCGC-GCCGCACGu -3' miRNA: 3'- gcaUGUGuGCaGCUGCGcCGGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 70322 | 0.67 | 0.79662 |
Target: 5'- aCGgacgACAUGCaGUUGcACGCGGCC-CACAu -3' miRNA: 3'- -GCa---UGUGUG-CAGC-UGCGCCGGcGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 44231 | 0.67 | 0.79662 |
Target: 5'- --cGCGCACGucuUCGACGCuGCCGUg-- -3' miRNA: 3'- gcaUGUGUGC---AGCUGCGcCGGCGugu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 64770 | 0.67 | 0.793025 |
Target: 5'- cCGUGCACACGgcgccgauggccaaUaugcuuguucgggCGACGCGcGCUGCGCc -3' miRNA: 3'- -GCAUGUGUGC--------------A-------------GCUGCGC-CGGCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 102865 | 0.68 | 0.787591 |
Target: 5'- gGUGCGaACGaCGACaacuauGCGGCCGUGCGc -3' miRNA: 3'- gCAUGUgUGCaGCUG------CGCCGGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 94202 | 0.68 | 0.787591 |
Target: 5'- gGUGCACAgGcaCGA-GUGGCCGCAgGg -3' miRNA: 3'- gCAUGUGUgCa-GCUgCGCCGGCGUgU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 90867 | 0.68 | 0.777499 |
Target: 5'- aGUGgACGCGUUG-CGCGGCauacuguCGUACGc -3' miRNA: 3'- gCAUgUGUGCAGCuGCGCCG-------GCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 64816 | 0.68 | 0.769126 |
Target: 5'- --cACGCACGUCaucaaGGCGCGGUCGaaaACu -3' miRNA: 3'- gcaUGUGUGCAG-----CUGCGCCGGCg--UGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 14529 | 0.68 | 0.769126 |
Target: 5'- gCGUGCGuCACGUCGuGC-CGGacgaCCGCGCGu -3' miRNA: 3'- -GCAUGU-GUGCAGC-UGcGCC----GGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 97279 | 0.68 | 0.759708 |
Target: 5'- aGUACAUAUGUUugGAaGUGGCCGCGg- -3' miRNA: 3'- gCAUGUGUGCAG--CUgCGCCGGCGUgu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 30912 | 0.68 | 0.759708 |
Target: 5'- aGUGCcgguGCugGUU--UGCGGCCGCAUg -3' miRNA: 3'- gCAUG----UGugCAGcuGCGCCGGCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 33653 | 0.68 | 0.750179 |
Target: 5'- aCGgagGCGCAgCGcggcCGGCGCGcuGCCGCGCGg -3' miRNA: 3'- -GCa--UGUGU-GCa---GCUGCGC--CGGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 37836 | 0.68 | 0.750179 |
Target: 5'- gCGgcgACACGCGuggugcuuaUCGACGCG-CaCGCGCAg -3' miRNA: 3'- -GCa--UGUGUGC---------AGCUGCGCcG-GCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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