miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 30806 0.71 0.598905
Target:  5'- uGUACGCuACGgggcagcUCGAC-CGGCCGCugGa -3'
miRNA:   3'- gCAUGUG-UGC-------AGCUGcGCCGGCGugU- -5'
21206 3' -56.9 NC_004778.3 + 30912 0.68 0.759708
Target:  5'- aGUGCcgguGCugGUU--UGCGGCCGCAUg -3'
miRNA:   3'- gCAUG----UGugCAGcuGCGCCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 33653 0.68 0.750179
Target:  5'- aCGgagGCGCAgCGcggcCGGCGCGcuGCCGCGCGg -3'
miRNA:   3'- -GCa--UGUGU-GCa---GCUGCGC--CGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 34140 0.74 0.41824
Target:  5'- --aGCGCGCGUacgaCGACGCGGUCGCcgGCGg -3'
miRNA:   3'- gcaUGUGUGCA----GCUGCGCCGGCG--UGU- -5'
21206 3' -56.9 NC_004778.3 + 34170 0.66 0.8394
Target:  5'- --aGCACGCGUuagCGACgguGCGGUCGcCGCGg -3'
miRNA:   3'- gcaUGUGUGCA---GCUG---CGCCGGC-GUGU- -5'
21206 3' -56.9 NC_004778.3 + 34428 0.69 0.691169
Target:  5'- --gGCGCAccugccCGUCGGCGCacGGCgCGCGCGg -3'
miRNA:   3'- gcaUGUGU------GCAGCUGCG--CCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 34884 0.75 0.390095
Target:  5'- uGUGCGCACGUCGACcucggcaGCGGCguuauaccgcaaGCGCAu -3'
miRNA:   3'- gCAUGUGUGCAGCUG-------CGCCGg-----------CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 37836 0.68 0.750179
Target:  5'- gCGgcgACACGCGuggugcuuaUCGACGCG-CaCGCGCAg -3'
miRNA:   3'- -GCa--UGUGUGC---------AGCUGCGCcG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 38304 0.66 0.870327
Target:  5'- --cGCGCACG-CGAcCGCGcGCCGaGCAc -3'
miRNA:   3'- gcaUGUGUGCaGCU-GCGC-CGGCgUGU- -5'
21206 3' -56.9 NC_004778.3 + 38451 0.72 0.539772
Target:  5'- --cGCGCAUGUCGuCGCGGuuCCGCAUc -3'
miRNA:   3'- gcaUGUGUGCAGCuGCGCC--GGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 38778 0.69 0.711128
Target:  5'- aGUACGCAgCGUCGAcCGCgcugacguugacGGCgUGCGCAa -3'
miRNA:   3'- gCAUGUGU-GCAGCU-GCG------------CCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 38940 0.66 0.862898
Target:  5'- gCGUGCGgaucgGCGUgGuCGCcGCCGCGCAc -3'
miRNA:   3'- -GCAUGUg----UGCAgCuGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 39209 0.66 0.877546
Target:  5'- uGUGCACguGCGUCaGCGCGGa-GCAgGg -3'
miRNA:   3'- gCAUGUG--UGCAGcUGCGCCggCGUgU- -5'
21206 3' -56.9 NC_004778.3 + 40815 0.66 0.877546
Target:  5'- aCGUcaaagACGCGCa--GACGCuGCUGCACAu -3'
miRNA:   3'- -GCA-----UGUGUGcagCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 41208 0.71 0.579705
Target:  5'- cCGU-CGCACGUgguuucgcguuUGACggGCGGCCGCGCc -3'
miRNA:   3'- -GCAuGUGUGCA-----------GCUG--CGCCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 43138 0.67 0.79662
Target:  5'- --gGCGC-CG-CGGCGC-GCCGCACGu -3'
miRNA:   3'- gcaUGUGuGCaGCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 44231 0.67 0.79662
Target:  5'- --cGCGCACGucuUCGACGCuGCCGUg-- -3'
miRNA:   3'- gcaUGUGUGC---AGCUGCGcCGGCGugu -5'
21206 3' -56.9 NC_004778.3 + 49307 0.66 0.847428
Target:  5'- gCGcgGCGCG-GUCauugGACGCGGCgcCGCACAa -3'
miRNA:   3'- -GCa-UGUGUgCAG----CUGCGCCG--GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 51132 0.7 0.650735
Target:  5'- uCGUACACGCcggCG-CGCGGCUgaaGCACu -3'
miRNA:   3'- -GCAUGUGUGca-GCuGCGCCGG---CGUGu -5'
21206 3' -56.9 NC_004778.3 + 52043 0.7 0.650735
Target:  5'- --aACACAaucacaagCGACGCGGCCgGCGCGu -3'
miRNA:   3'- gcaUGUGUgca-----GCUGCGCCGG-CGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.