miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 1624 0.66 0.870327
Target:  5'- --aACACACGUUG-CGCuuGCUGCGCu -3'
miRNA:   3'- gcaUGUGUGCAGCuGCGc-CGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 3048 0.67 0.805502
Target:  5'- -aUAUugAUGUCaACGCGGCaagGCACAc -3'
miRNA:   3'- gcAUGugUGCAGcUGCGCCGg--CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 4010 0.74 0.44487
Target:  5'- --cACGCACGUCGGCGCGuCCuCGCAa -3'
miRNA:   3'- gcaUGUGUGCAGCUGCGCcGGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 4671 0.76 0.352211
Target:  5'- gGUGC---CGUCGAuaaCGCGGCCGCACGg -3'
miRNA:   3'- gCAUGuguGCAGCU---GCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 7646 0.66 0.855262
Target:  5'- -uUACGCGCGgcaaUGAUGU-GCCGCGCAu -3'
miRNA:   3'- gcAUGUGUGCa---GCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 7814 0.75 0.384286
Target:  5'- aCGUGCGCuCGgccgaCGGCGUGGaCCGCGCGc -3'
miRNA:   3'- -GCAUGUGuGCa----GCUGCGCC-GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 8000 0.68 0.750179
Target:  5'- uGUGCGCgGCGcCGACGgcggcgacaCGGCCGaCGCGu -3'
miRNA:   3'- gCAUGUG-UGCaGCUGC---------GCCGGC-GUGU- -5'
21206 3' -56.9 NC_004778.3 + 9405 0.69 0.718055
Target:  5'- --cACGCGCGcaaacugcagcaguUUGGCGUGGCgCGCACGu -3'
miRNA:   3'- gcaUGUGUGC--------------AGCUGCGCCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 10267 0.67 0.805502
Target:  5'- -uUGCGCGCGg-GAC-CGGCgGCGCAu -3'
miRNA:   3'- gcAUGUGUGCagCUGcGCCGgCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 14529 0.68 0.769126
Target:  5'- gCGUGCGuCACGUCGuGC-CGGacgaCCGCGCGu -3'
miRNA:   3'- -GCAUGU-GUGCAGC-UGcGCC----GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 14791 0.67 0.814229
Target:  5'- cCGUGCGCAaa-CGcuuCGCGGCUGCAa- -3'
miRNA:   3'- -GCAUGUGUgcaGCu--GCGCCGGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 16302 0.69 0.691169
Target:  5'- aCGUgccgGCAgGCGUCGGCGUGauaaCUGCGCAg -3'
miRNA:   3'- -GCA----UGUgUGCAGCUGCGCc---GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 19482 0.66 0.862898
Target:  5'- aCGUAauggGCGCGcCGACGUgcaaauGGuuGCGCAc -3'
miRNA:   3'- -GCAUg---UGUGCaGCUGCG------CCggCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 20362 0.66 0.862898
Target:  5'- uGUGCugcaACGCGUCGGuuuuaGCcaaGGCCGCAUc -3'
miRNA:   3'- gCAUG----UGUGCAGCUg----CG---CCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 21746 0.66 0.847428
Target:  5'- --gAC-CGCG-CGugGCGGCCuccacGCGCAa -3'
miRNA:   3'- gcaUGuGUGCaGCugCGCCGG-----CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 23868 0.66 0.862143
Target:  5'- cCGUACucgaaaaGCGCgGUCGGCGCuGaCGCACGu -3'
miRNA:   3'- -GCAUG-------UGUG-CAGCUGCGcCgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 24065 0.66 0.862143
Target:  5'- cCGUACucgaaaaGCGCgGUCGGCGCuGaCGCACGu -3'
miRNA:   3'- -GCAUG-------UGUG-CAGCUGCGcCgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 24263 0.66 0.870327
Target:  5'- cCGUACucgaaaaaGCGCgGUCGGCGCuGaCGCACGu -3'
miRNA:   3'- -GCAUG--------UGUG-CAGCUGCGcCgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 25968 0.68 0.74922
Target:  5'- uGUACGCcuuaacgGCGUUGA-GCGuGCUGCACGu -3'
miRNA:   3'- gCAUGUG-------UGCAGCUgCGC-CGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 27881 0.66 0.870327
Target:  5'- uGUACGCgGCGgcgagugUGugGCGGCCaGCGa- -3'
miRNA:   3'- gCAUGUG-UGCa------GCugCGCCGG-CGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.