miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 30912 0.68 0.759708
Target:  5'- aGUGCcgguGCugGUU--UGCGGCCGCAUg -3'
miRNA:   3'- gCAUG----UGugCAGcuGCGCCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 60474 0.7 0.660886
Target:  5'- aCGUugAgGuCGUCGACGCucagcuGCCGCGCc -3'
miRNA:   3'- -GCAugUgU-GCAGCUGCGc-----CGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 55679 0.69 0.688156
Target:  5'- uGUugGCGCGacuaauguuguuugUCGA-GCGGCUGUACAc -3'
miRNA:   3'- gCAugUGUGC--------------AGCUgCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 16302 0.69 0.691169
Target:  5'- aCGUgccgGCAgGCGUCGGCGUGauaaCUGCGCAg -3'
miRNA:   3'- -GCA----UGUgUGCAGCUGCGCc---GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 107597 0.69 0.701177
Target:  5'- aCGUACGCACGgucagugacaUUGACGCG--CGCGCAa -3'
miRNA:   3'- -GCAUGUGUGC----------AGCUGCGCcgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 9405 0.69 0.718055
Target:  5'- --cACGCGCGcaaacugcagcaguUUGGCGUGGCgCGCACGu -3'
miRNA:   3'- gcaUGUGUGC--------------AGCUGCGCCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 120958 0.69 0.721013
Target:  5'- --gACugGCGg-GGCGCgGGCCGCGCc -3'
miRNA:   3'- gcaUGugUGCagCUGCG-CCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 25968 0.68 0.74922
Target:  5'- uGUACGCcuuaacgGCGUUGA-GCGuGCUGCACGu -3'
miRNA:   3'- gCAUGUG-------UGCAGCUgCGC-CGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 37836 0.68 0.750179
Target:  5'- gCGgcgACACGCGuggugcuuaUCGACGCG-CaCGCGCAg -3'
miRNA:   3'- -GCa--UGUGUGC---------AGCUGCGCcG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 51132 0.7 0.650735
Target:  5'- uCGUACACGCcggCG-CGCGGCUgaaGCACu -3'
miRNA:   3'- -GCAUGUGUGca-GCuGCGCCGG---CGUGu -5'
21206 3' -56.9 NC_004778.3 + 83270 0.71 0.610065
Target:  5'- --gACGCGCGgaaCGGCGCGGCggcucCGCGCu -3'
miRNA:   3'- gcaUGUGUGCa--GCUGCGCCG-----GCGUGu -5'
21206 3' -56.9 NC_004778.3 + 116031 0.71 0.599919
Target:  5'- -aUGCGCACGUCGAUuggucCGGCgUGCGCAu -3'
miRNA:   3'- gcAUGUGUGCAGCUGc----GCCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 118767 0.76 0.344494
Target:  5'- aCGUGC-CACGcuucgggcgCGGCGCGGCCgGCGCGc -3'
miRNA:   3'- -GCAUGuGUGCa--------GCUGCGCCGG-CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 4671 0.76 0.352211
Target:  5'- gGUGC---CGUCGAuaaCGCGGCCGCACGg -3'
miRNA:   3'- gCAUGuguGCAGCU---GCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 34884 0.75 0.390095
Target:  5'- uGUGCGCACGUCGACcucggcaGCGGCguuauaccgcaaGCGCAu -3'
miRNA:   3'- gCAUGUGUGCAGCUG-------CGCCGg-----------CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 34140 0.74 0.41824
Target:  5'- --aGCGCGCGUacgaCGACGCGGUCGCcgGCGg -3'
miRNA:   3'- gcaUGUGUGCA----GCUGCGCCGGCG--UGU- -5'
21206 3' -56.9 NC_004778.3 + 4010 0.74 0.44487
Target:  5'- --cACGCACGUCGGCGCGuCCuCGCAa -3'
miRNA:   3'- gcaUGUGUGCAGCUGCGCcGGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 68141 0.73 0.463141
Target:  5'- cCGUACucucGCACGUCGGCGaCGGCgcaucguaGCGCGu -3'
miRNA:   3'- -GCAUG----UGUGCAGCUGC-GCCGg-------CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 121425 0.72 0.517229
Target:  5'- --gGCACGCGUCGGcCGUGucgccgccgucggcGCCGCGCAc -3'
miRNA:   3'- gcaUGUGUGCAGCU-GCGC--------------CGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 30806 0.71 0.598905
Target:  5'- uGUACGCuACGgggcagcUCGAC-CGGCCGCugGa -3'
miRNA:   3'- gCAUGUG-UGC-------AGCUGcGCCGGCGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.