Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 112191 | 0.66 | 0.869594 |
Target: 5'- -cUGCACuuCGuucUCGGCgcccucgcgcauaGCGGCCGCGCGg -3' miRNA: 3'- gcAUGUGu-GC---AGCUG-------------CGCCGGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 95778 | 0.66 | 0.855262 |
Target: 5'- ---cCGCGCGgcagCG-CGcCGGCCGCGCu -3' miRNA: 3'- gcauGUGUGCa---GCuGC-GCCGGCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 38940 | 0.66 | 0.862898 |
Target: 5'- gCGUGCGgaucgGCGUgGuCGCcGCCGCGCAc -3' miRNA: 3'- -GCAUGUg----UGCAgCuGCGcCGGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 90314 | 0.66 | 0.869594 |
Target: 5'- uGUACauguuACGCGUCGgguuguaauuaagGCGCGGCaugaacaagaGCACGu -3' miRNA: 3'- gCAUG-----UGUGCAGC-------------UGCGCCGg---------CGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 23868 | 0.66 | 0.862143 |
Target: 5'- cCGUACucgaaaaGCGCgGUCGGCGCuGaCGCACGu -3' miRNA: 3'- -GCAUG-------UGUG-CAGCUGCGcCgGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 24065 | 0.66 | 0.862143 |
Target: 5'- cCGUACucgaaaaGCGCgGUCGGCGCuGaCGCACGu -3' miRNA: 3'- -GCAUG-------UGUG-CAGCUGCGcCgGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 20362 | 0.66 | 0.862898 |
Target: 5'- uGUGCugcaACGCGUCGGuuuuaGCcaaGGCCGCAUc -3' miRNA: 3'- gCAUG----UGUGCAGCUg----CG---CCGGCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 61362 | 0.66 | 0.870327 |
Target: 5'- uGUGCGgACGgcgcCGGCGCGucGUCGCugAg -3' miRNA: 3'- gCAUGUgUGCa---GCUGCGC--CGGCGugU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 1624 | 0.66 | 0.870327 |
Target: 5'- --aACACACGUUG-CGCuuGCUGCGCu -3' miRNA: 3'- gcaUGUGUGCAGCuGCGc-CGGCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 64154 | 0.66 | 0.855262 |
Target: 5'- ----aGCGCGUCGcgccCGUGGCCGC-CGa -3' miRNA: 3'- gcaugUGUGCAGCu---GCGCCGGCGuGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 73505 | 0.66 | 0.854488 |
Target: 5'- gCGUGCACGC-UCGuguacacGCGCaauucGGCgGCGCAg -3' miRNA: 3'- -GCAUGUGUGcAGC-------UGCG-----CCGgCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 49307 | 0.66 | 0.847428 |
Target: 5'- gCGcgGCGCG-GUCauugGACGCGGCgcCGCACAa -3' miRNA: 3'- -GCa-UGUGUgCAG----CUGCGCCG--GCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 64660 | 0.66 | 0.877546 |
Target: 5'- cCGUGCGCuuuCaaCGGCGCGGgCCaCACAu -3' miRNA: 3'- -GCAUGUGu--GcaGCUGCGCC-GGcGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 112410 | 0.66 | 0.876834 |
Target: 5'- aGgcgGCACGuaguaaucaucuuCGcUCGACGCGGgCCGCAg- -3' miRNA: 3'- gCa--UGUGU-------------GC-AGCUGCGCC-GGCGUgu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 38304 | 0.66 | 0.870327 |
Target: 5'- --cGCGCACG-CGAcCGCGcGCCGaGCAc -3' miRNA: 3'- gcaUGUGUGCaGCU-GCGC-CGGCgUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 27881 | 0.66 | 0.870327 |
Target: 5'- uGUACGCgGCGgcgagugUGugGCGGCCaGCGa- -3' miRNA: 3'- gCAUGUG-UGCa------GCugCGCCGG-CGUgu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 82378 | 0.66 | 0.877546 |
Target: 5'- uGUAguCAUGUCGAUgggaGUGGCCgGCAUu -3' miRNA: 3'- gCAUguGUGCAGCUG----CGCCGG-CGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 24263 | 0.66 | 0.870327 |
Target: 5'- cCGUACucgaaaaaGCGCgGUCGGCGCuGaCGCACGu -3' miRNA: 3'- -GCAUG--------UGUG-CAGCUGCGcCgGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 95309 | 0.66 | 0.8394 |
Target: 5'- uGUGCACAUGcUCG-CGuuGCgGCACGu -3' miRNA: 3'- gCAUGUGUGC-AGCuGCgcCGgCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 117687 | 0.66 | 0.8394 |
Target: 5'- uGUGCGC-CGUgGAC-CGGCCGUc-- -3' miRNA: 3'- gCAUGUGuGCAgCUGcGCCGGCGugu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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