miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 96470 1.09 0.002205
Target:  5'- aCGUACACACGUCGACGCGGCCGCACAg -3'
miRNA:   3'- -GCAUGUGUGCAGCUGCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 118731 0.78 0.249317
Target:  5'- uGUGCGCuugGCcUCGGCGCGGCgGCGCAc -3'
miRNA:   3'- gCAUGUG---UGcAGCUGCGCCGgCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 55951 0.76 0.314853
Target:  5'- gCGUGCACGCGgaaCGACGUaGCuCGCGCAu -3'
miRNA:   3'- -GCAUGUGUGCa--GCUGCGcCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 118767 0.76 0.344494
Target:  5'- aCGUGC-CACGcuucgggcgCGGCGCGGCCgGCGCGc -3'
miRNA:   3'- -GCAUGuGUGCa--------GCUGCGCCGG-CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 4671 0.76 0.352211
Target:  5'- gGUGC---CGUCGAuaaCGCGGCCGCACGg -3'
miRNA:   3'- gCAUGuguGCAGCU---GCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 122077 0.75 0.368009
Target:  5'- gGUACGCG-GUCGAC-CGGCaCGCGCAu -3'
miRNA:   3'- gCAUGUGUgCAGCUGcGCCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 98510 0.75 0.376088
Target:  5'- cCGUACuugACGCcaUCGAUGCGGCCGCAa- -3'
miRNA:   3'- -GCAUG---UGUGc-AGCUGCGCCGGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 7814 0.75 0.384286
Target:  5'- aCGUGCGCuCGgccgaCGGCGUGGaCCGCGCGc -3'
miRNA:   3'- -GCAUGUGuGCa----GCUGCGCC-GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 34884 0.75 0.390095
Target:  5'- uGUGCGCACGUCGACcucggcaGCGGCguuauaccgcaaGCGCAu -3'
miRNA:   3'- gCAUGUGUGCAGCUG-------CGCCGg-----------CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 94500 0.74 0.409581
Target:  5'- aCGUugGCACaauaaCGACGCcGCCGCGCAc -3'
miRNA:   3'- -GCAugUGUGca---GCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 34140 0.74 0.41824
Target:  5'- --aGCGCGCGUacgaCGACGCGGUCGCcgGCGg -3'
miRNA:   3'- gcaUGUGUGCA----GCUGCGCCGGCG--UGU- -5'
21206 3' -56.9 NC_004778.3 + 4010 0.74 0.44487
Target:  5'- --cACGCACGUCGGCGCGuCCuCGCAa -3'
miRNA:   3'- gcaUGUGUGCAGCUGCGCcGGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 55120 0.73 0.453955
Target:  5'- --gGCGCACGUCGuaagguaucaGCGCGaGCCGCAg- -3'
miRNA:   3'- gcaUGUGUGCAGC----------UGCGC-CGGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 85599 0.73 0.453955
Target:  5'- -uUGC-CGCGUCGGa-CGGCCGCGCAa -3'
miRNA:   3'- gcAUGuGUGCAGCUgcGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 68141 0.73 0.463141
Target:  5'- cCGUACucucGCACGUCGGCGaCGGCgcaucguaGCGCGu -3'
miRNA:   3'- -GCAUG----UGUGCAGCUGC-GCCGg-------CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 121425 0.72 0.517229
Target:  5'- --gGCACGCGUCGGcCGUGucgccgccgucggcGCCGCGCAc -3'
miRNA:   3'- gcaUGUGUGCAGCU-GCGC--------------CGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 82057 0.72 0.529927
Target:  5'- gCGUGCgACACGUCG-CGCccaaaauaacGCCGCACGc -3'
miRNA:   3'- -GCAUG-UGUGCAGCuGCGc---------CGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 38451 0.72 0.539772
Target:  5'- --cGCGCAUGUCGuCGCGGuuCCGCAUc -3'
miRNA:   3'- gcaUGUGUGCAGCuGCGCC--GGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 64150 0.72 0.563638
Target:  5'- uGUGCAaACGUUGGCGCGGUgggcguccaucacguCGUACAa -3'
miRNA:   3'- gCAUGUgUGCAGCUGCGCCG---------------GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 65922 0.71 0.579705
Target:  5'- aGUAagaaGCGCGUUGugGCGccGCCGCAgCAu -3'
miRNA:   3'- gCAUg---UGUGCAGCugCGC--CGGCGU-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.