Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21208 | 5' | -60.8 | NC_004778.3 | + | 95280 | 1.11 | 0.000595 |
Target: 5'- cUGCGCAGCUUGUCGCCGCCGGCGACCg -3' miRNA: 3'- -ACGCGUCGAACAGCGGCGGCCGCUGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 121429 | 0.79 | 0.119045 |
Target: 5'- cGCGuCGGCcgUGUCGCCGCCgucGGCG-CCg -3' miRNA: 3'- aCGC-GUCGa-ACAGCGGCGG---CCGCuGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 86338 | 0.75 | 0.211032 |
Target: 5'- uUGCGCAGCa----GCCGCCGGUaguaaGGCCg -3' miRNA: 3'- -ACGCGUCGaacagCGGCGGCCG-----CUGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 38936 | 0.75 | 0.221425 |
Target: 5'- cUGCGCgugcggaucGGCgugGUCGCCGCCGcGC-ACCa -3' miRNA: 3'- -ACGCG---------UCGaa-CAGCGGCGGC-CGcUGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 112468 | 0.75 | 0.221425 |
Target: 5'- aUGUGCGGCa-GUCGCucgCGCCaGCGGCCg -3' miRNA: 3'- -ACGCGUCGaaCAGCG---GCGGcCGCUGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 34180 | 0.75 | 0.226783 |
Target: 5'- aGCGaCGGUgcgGUCGCCG-CGGCGcACCa -3' miRNA: 3'- aCGC-GUCGaa-CAGCGGCgGCCGC-UGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 10251 | 0.74 | 0.242944 |
Target: 5'- gUGCGCAGCg---CGCCGauugcgcgcgggaCCGGCGGCg -3' miRNA: 3'- -ACGCGUCGaacaGCGGC-------------GGCCGCUGg -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 114272 | 0.74 | 0.24932 |
Target: 5'- gGCGgAGaugucguucaaCUUGUCGCUGCCG-CGACCg -3' miRNA: 3'- aCGCgUC-----------GAACAGCGGCGGCcGCUGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 34142 | 0.74 | 0.261267 |
Target: 5'- cGCGCGuacgacgacGCg-GUCGCCGgCGGCGACa -3' miRNA: 3'- aCGCGU---------CGaaCAGCGGCgGCCGCUGg -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 25645 | 0.74 | 0.261267 |
Target: 5'- uUGUGCaAGCUUG-CGCggggGCCGGCGGCg -3' miRNA: 3'- -ACGCG-UCGAACaGCGg---CGGCCGCUGg -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 56391 | 0.74 | 0.267413 |
Target: 5'- uUGCGCGGCggGUCGCUGCCG-CaAUCg -3' miRNA: 3'- -ACGCGUCGaaCAGCGGCGGCcGcUGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 7897 | 0.72 | 0.313727 |
Target: 5'- gGCGUgGGCgUGUUGCUgGCCGGCGGCg -3' miRNA: 3'- aCGCG-UCGaACAGCGG-CGGCCGCUGg -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 8706 | 0.72 | 0.323689 |
Target: 5'- cGCGCcggguuacGGUUUGgccgagaacuuugaCGCCGCCGGCG-CCg -3' miRNA: 3'- aCGCG--------UCGAACa-------------GCGGCGGCCGCuGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 54287 | 0.72 | 0.32803 |
Target: 5'- aGCuGCGGCcagUGagccCGCC-CCGGCGGCCa -3' miRNA: 3'- aCG-CGUCGa--ACa---GCGGcGGCCGCUGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 51801 | 0.72 | 0.32803 |
Target: 5'- --aGgGGCUUGUCGCCuuucaGGCGACCg -3' miRNA: 3'- acgCgUCGAACAGCGGcgg--CCGCUGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 25294 | 0.71 | 0.357288 |
Target: 5'- cGCGCAGCgcacuucGUCGCCGCgucccaagUaguagaacccauuGGCGGCCa -3' miRNA: 3'- aCGCGUCGaa-----CAGCGGCG--------G-------------CCGCUGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 72472 | 0.71 | 0.363512 |
Target: 5'- gGUGCGGUUauauuugugccaagUGcCGCCGUCGGUGGCg -3' miRNA: 3'- aCGCGUCGA--------------ACaGCGGCGGCCGCUGg -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 48860 | 0.71 | 0.365865 |
Target: 5'- uUGCGCAGUUgGUCGCgcacgGCCuuGGCGGCa -3' miRNA: 3'- -ACGCGUCGAaCAGCGg----CGG--CCGCUGg -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 29170 | 0.71 | 0.365865 |
Target: 5'- aGCGCGugacGCUgccacggGUCGUCGCuCGGCaGCCa -3' miRNA: 3'- aCGCGU----CGAa------CAGCGGCG-GCCGcUGG- -5' |
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21208 | 5' | -60.8 | NC_004778.3 | + | 2454 | 0.71 | 0.365865 |
Target: 5'- aGUGCGGCa---CGCCGCUGGUuaucGACCa -3' miRNA: 3'- aCGCGUCGaacaGCGGCGGCCG----CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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