miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21208 5' -60.8 NC_004778.3 + 2021 0.66 0.653201
Target:  5'- cGCGUcgaAGCUgcucucgGUCGuaGUCGGCcGCCa -3'
miRNA:   3'- aCGCG---UCGAa------CAGCggCGGCCGcUGG- -5'
21208 5' -60.8 NC_004778.3 + 2454 0.71 0.365865
Target:  5'- aGUGCGGCa---CGCCGCUGGUuaucGACCa -3'
miRNA:   3'- aCGCGUCGaacaGCGGCGGCCG----CUGG- -5'
21208 5' -60.8 NC_004778.3 + 2533 0.69 0.477351
Target:  5'- gGUGCAGCguauuaaUGCgGgCGGCGACCu -3'
miRNA:   3'- aCGCGUCGaaca---GCGgCgGCCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 6950 0.67 0.573356
Target:  5'- cGCGCuaauaaaCUUGUCGCUGuuGGCGu-- -3'
miRNA:   3'- aCGCGuc-----GAACAGCGGCggCCGCugg -5'
21208 5' -60.8 NC_004778.3 + 7897 0.72 0.313727
Target:  5'- gGCGUgGGCgUGUUGCUgGCCGGCGGCg -3'
miRNA:   3'- aCGCG-UCGaACAGCGG-CGGCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 8001 0.67 0.573356
Target:  5'- gUGCGCGGCgc--CGaCGgCGGCGACa -3'
miRNA:   3'- -ACGCGUCGaacaGCgGCgGCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 8018 0.67 0.614172
Target:  5'- cUGCGCGGCguuuucgaaggggcUGcuagcgugcacccaUCGCCGCgGGCuGAUCa -3'
miRNA:   3'- -ACGCGUCGa-------------AC--------------AGCGGCGgCCG-CUGG- -5'
21208 5' -60.8 NC_004778.3 + 8218 0.66 0.68308
Target:  5'- cGcCGCAGUUUGUgGaCGUUaGCGACCu -3'
miRNA:   3'- aC-GCGUCGAACAgCgGCGGcCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 8706 0.72 0.323689
Target:  5'- cGCGCcggguuacGGUUUGgccgagaacuuugaCGCCGCCGGCG-CCg -3'
miRNA:   3'- aCGCG--------UCGAACa-------------GCGGCGGCCGCuGG- -5'
21208 5' -60.8 NC_004778.3 + 9358 0.66 0.663187
Target:  5'- cGCGCguaccuauGGUUUGUCuGCCcaugaUgGGCGACCa -3'
miRNA:   3'- aCGCG--------UCGAACAG-CGGc----GgCCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 10251 0.74 0.242944
Target:  5'- gUGCGCAGCg---CGCCGauugcgcgcgggaCCGGCGGCg -3'
miRNA:   3'- -ACGCGUCGaacaGCGGC-------------GGCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 10687 0.7 0.441174
Target:  5'- aGCGUGGCacguguugagUGUgCGCCGCCGcGCcgaGGCCa -3'
miRNA:   3'- aCGCGUCGa---------ACA-GCGGCGGC-CG---CUGG- -5'
21208 5' -60.8 NC_004778.3 + 14526 0.71 0.381819
Target:  5'- cGCGCGuGCgucacGUCG-UGCCGGaCGACCg -3'
miRNA:   3'- aCGCGU-CGaa---CAGCgGCGGCC-GCUGG- -5'
21208 5' -60.8 NC_004778.3 + 15445 0.68 0.534174
Target:  5'- -uCGCAGCgc--CGCCuCCGcGCGACCa -3'
miRNA:   3'- acGCGUCGaacaGCGGcGGC-CGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 19415 0.7 0.450075
Target:  5'- gGCaGUAGCcaaaCGCCGUCGGCGcGCCg -3'
miRNA:   3'- aCG-CGUCGaacaGCGGCGGCCGC-UGG- -5'
21208 5' -60.8 NC_004778.3 + 19467 0.67 0.59321
Target:  5'- ---cCAGCUUGUCGUCGCacguaaugGGCGcGCCg -3'
miRNA:   3'- acgcGUCGAACAGCGGCGg-------CCGC-UGG- -5'
21208 5' -60.8 NC_004778.3 + 20984 0.68 0.567429
Target:  5'- aGCGCAGC-UGUCcguacaacaaauacaGCC-CgCGGCGcACCa -3'
miRNA:   3'- aCGCGUCGaACAG---------------CGGcG-GCCGC-UGG- -5'
21208 5' -60.8 NC_004778.3 + 22818 0.7 0.450075
Target:  5'- cUGCGCAGCguuUGcgacaCGCCGUuaaUGGCGuCCg -3'
miRNA:   3'- -ACGCGUCGa--ACa----GCGGCG---GCCGCuGG- -5'
21208 5' -60.8 NC_004778.3 + 23985 0.68 0.553662
Target:  5'- gGCGCGGgaUcg-GCCGCUGcGUGACCg -3'
miRNA:   3'- aCGCGUCgaAcagCGGCGGC-CGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 24960 0.66 0.680105
Target:  5'- cGuCGCAGUaaaaacauuugacuUUGUCGCUacgGCCGGUGuaaaagaaGCCa -3'
miRNA:   3'- aC-GCGUCG--------------AACAGCGG---CGGCCGC--------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.