miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21210 3' -62.5 NC_004778.3 + 4531 0.7 0.377928
Target:  5'- cGCGUGGuguUcguuaaaucuaucacGGCGCCCAgCGCGCUguGCCGc -3'
miRNA:   3'- -CGCACC---A---------------CCGCGGGUgGUGUGG--CGGC- -5'
21210 3' -62.5 NC_004778.3 + 6542 0.68 0.458671
Target:  5'- cGUGuUGGUGGCGCCgACC---CCGCUu -3'
miRNA:   3'- -CGC-ACCACCGCGGgUGGuguGGCGGc -5'
21210 3' -62.5 NC_004778.3 + 7867 0.68 0.5042
Target:  5'- aGCGcGGUGGCGCCCACguuUACCu--- -3'
miRNA:   3'- -CGCaCCACCGCGGGUGgu-GUGGcggc -5'
21210 3' -62.5 NC_004778.3 + 10653 0.69 0.423877
Target:  5'- uCGUaauuGUGcGCGCCgGCCGCGCCGCg- -3'
miRNA:   3'- cGCAc---CAC-CGCGGgUGGUGUGGCGgc -5'
21210 3' -62.5 NC_004778.3 + 10687 0.68 0.485739
Target:  5'- aGCGUGGcacguguugagUGuGCG-CCGCCGCGCCgagGCCa -3'
miRNA:   3'- -CGCACC-----------AC-CGCgGGUGGUGUGG---CGGc -5'
21210 3' -62.5 NC_004778.3 + 11992 0.72 0.301898
Target:  5'- aCGUGGcaGGC-CgCUGCCGCGCCGCCGc -3'
miRNA:   3'- cGCACCa-CCGcG-GGUGGUGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 15480 0.66 0.577725
Target:  5'- cGCGUGuGUGGaugcuguacgucauCGUgCGCCAU-CCGCCGc -3'
miRNA:   3'- -CGCAC-CACC--------------GCGgGUGGUGuGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 18501 0.66 0.570916
Target:  5'- aUGgGGUGGCGCCCGCCu--CCaGCa- -3'
miRNA:   3'- cGCaCCACCGCGGGUGGuguGG-CGgc -5'
21210 3' -62.5 NC_004778.3 + 21500 0.66 0.580649
Target:  5'- ---cGGaUGGCGCcgCCACCGC-CgGCCGa -3'
miRNA:   3'- cgcaCC-ACCGCG--GGUGGUGuGgCGGC- -5'
21210 3' -62.5 NC_004778.3 + 26560 0.67 0.532438
Target:  5'- aGCGUGGU-GCGCaCgGCCGCAUaguUGUCGu -3'
miRNA:   3'- -CGCACCAcCGCG-GgUGGUGUG---GCGGC- -5'
21210 3' -62.5 NC_004778.3 + 27484 0.69 0.407083
Target:  5'- aCGUGccGUGG-GCCgACCACAUgGCCGu -3'
miRNA:   3'- cGCAC--CACCgCGGgUGGUGUGgCGGC- -5'
21210 3' -62.5 NC_004778.3 + 30670 0.71 0.315554
Target:  5'- cGCGUcgcuggggauGGUGGCGgCUugCACGCgCGCUGc -3'
miRNA:   3'- -CGCA----------CCACCGCgGGugGUGUG-GCGGC- -5'
21210 3' -62.5 NC_004778.3 + 31453 0.68 0.449828
Target:  5'- uGCGaucuuUGGacGCGCCCAauaC-CACCGCCGa -3'
miRNA:   3'- -CGC-----ACCacCGCGGGUg--GuGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 36466 0.72 0.263676
Target:  5'- gGUGUGGUGG-GCgCCACCACGCgcuugGCCu -3'
miRNA:   3'- -CGCACCACCgCG-GGUGGUGUGg----CGGc -5'
21210 3' -62.5 NC_004778.3 + 36692 0.73 0.251258
Target:  5'- cCGUGGgcaacaccGCGCUCGCCaagacgcGCACCGCCGg -3'
miRNA:   3'- cGCACCac------CGCGGGUGG-------UGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 39550 0.67 0.565094
Target:  5'- cGCGcaagccgcuuGCGCCCACCACGCUGCa- -3'
miRNA:   3'- -CGCaccac-----CGCGGGUGGUGUGGCGgc -5'
21210 3' -62.5 NC_004778.3 + 42507 0.66 0.580649
Target:  5'- gGCGUGGUcGGCguGCCCGacaaCGgGCUGCUc -3'
miRNA:   3'- -CGCACCA-CCG--CGGGUg---GUgUGGCGGc -5'
21210 3' -62.5 NC_004778.3 + 43967 0.68 0.475724
Target:  5'- cGCGauuaUGGauuacuuUGGCGCgCCGCCcaacGCGCgGCCGg -3'
miRNA:   3'- -CGC----ACC-------ACCGCG-GGUGG----UGUGgCGGC- -5'
21210 3' -62.5 NC_004778.3 + 50210 0.68 0.466709
Target:  5'- cGCGgcaGUGGCGCgcgacggUCACCACG-CGCCGu -3'
miRNA:   3'- -CGCac-CACCGCG-------GGUGGUGUgGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 52988 0.67 0.513544
Target:  5'- --cUGGccgcaGGC-CCCGCCGCaACCGCCGc -3'
miRNA:   3'- cgcACCa----CCGcGGGUGGUG-UGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.